Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1770213	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1770216	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1777243	0.82[EUR][1000 genomes]
rs1777245	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1777258	0.82[EUR][1000 genomes]
rs1777260	0.82[EUR][1000 genomes]
rs1777261	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1777264	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1890839	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1890840	0.82[EUR][1000 genomes]
rs1890845	0.90[ASN][1000 genomes]
rs1934628	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1934629	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1934630	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1934636	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2884390	0.90[ASN][1000 genomes]
rs4405188	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6665563	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7514108	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9429846	0.97[ASN][1000 genomes]
rs9429847	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873153	chr1:210900481-210994339	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv999018	chr1:210907239-210999306	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210871200-210932000	Weak transcription	HSMM	muscle
2	chr1:210917400-210930800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:210919800-210928600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:210920800-210923400	Weak transcription	HSMMtube	muscle
5	chr1:210920800-210928200	Weak transcription	Esophagus	oesophagus
6	chr1:210921600-210931400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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