Variant report

Variant	rs4952342
Chromosome Location	chr2:33347056-33347057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11124306	0.82[JPT][hapmap]
rs12373630	0.86[CHB][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs12620839	0.88[MEX][hapmap]
rs1545550	0.83[MEX][hapmap]
rs17012569	0.82[MEX][hapmap]
rs17396814	1.00[YRI][hapmap]
rs743236	0.81[CHD][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998167	chr2:33074313-33541100	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv535623	chr2:33074313-33541100	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
4	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
5	esv33628	chr2:33257484-33455355	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1012946	chr2:33294522-33370391	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv535626	chr2:33294522-33370391	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv873789	chr2:33297967-33390188	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33328800-33347800	Weak transcription	Psoas Muscle	Psoas
2	chr2:33333800-33355200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:33336600-33347800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:33336600-33358400	Weak transcription	HUVEC	blood vessel
5	chr2:33336800-33352800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:33336800-33353400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr2:33336800-33358200	Weak transcription	Liver	Liver
8	chr2:33342200-33355000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr2:33342400-33350200	Weak transcription	Aorta	Aorta
10	chr2:33343000-33348200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr2:33343200-33347800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr2:33344000-33357600	Weak transcription	Left Ventricle	heart
13	chr2:33344200-33347600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr2:33344200-33347800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:33344400-33347800	Weak transcription	NHEK	skin
16	chr2:33344600-33347200	Weak transcription	Fetal Heart	heart
17	chr2:33346400-33347200	Enhancers	K562	blood
18	chr2:33346800-33358400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr2:33347000-33347400	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
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