Variant report

Variant	rs4955470
Chromosome Location	chr3:134386872-134386873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13089566	0.83[JPT][hapmap]
rs1447691	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1823217	0.88[EUR][1000 genomes]
rs1982353	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6763188	1.00[JPT][hapmap]
rs6775611	0.81[JPT][hapmap]
rs7636265	0.87[EUR][1000 genomes]
rs7637801	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs766492	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs9818188	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9883955	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134381600-134388400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:134384400-134392200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:134384800-134387400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:134385200-134390600	Weak transcription	Fetal Brain Male	brain
5	chr3:134386000-134396400	Weak transcription	Psoas Muscle	Psoas
6	chr3:134386200-134396200	Weak transcription	Right Ventricle	heart
7	chr3:134386800-134387200	ZNF genes & repeats	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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