Variant report

Variant	rs4955533
Chromosome Location	chr3:134703667-134703668
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1020434	1.00[JPT][hapmap]
rs1100567	0.92[ASN][1000 genomes]
rs13353524	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1350350	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs16842415	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16842453	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs16842456	0.97[ASN][1000 genomes]
rs16842468	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17203924	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs187585	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs253878	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs253880	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs28223	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs36059	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs36061	0.92[ASN][1000 genomes]
rs36062	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs36063	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs36065	0.88[ASN][1000 genomes]
rs36074	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs36097	1.00[JPT][hapmap]
rs36102	1.00[JPT][hapmap]
rs36109	1.00[JPT][hapmap]
rs36110	1.00[JPT][hapmap]
rs36111	1.00[JPT][hapmap]
rs36112	1.00[JPT][hapmap]
rs36114	1.00[JPT][hapmap]
rs36115	1.00[JPT][hapmap]
rs36116	1.00[JPT][hapmap]
rs36117	1.00[JPT][hapmap]
rs36121	1.00[JPT][hapmap]
rs36123	1.00[JPT][hapmap]
rs36124	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3853726	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs39698	1.00[JPT][hapmap]
rs39699	1.00[JPT][hapmap]
rs40524	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4102409	0.92[ASN][1000 genomes]
rs41182	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs484317	0.87[ASN][1000 genomes]
rs574719	1.00[JPT][hapmap]
rs6776069	0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6788931	1.00[JPT][hapmap]
rs7650345	1.00[JPT][hapmap]
rs849853	0.87[ASN][1000 genomes]
rs875984	1.00[JPT][hapmap]
rs9289488	0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9832922	1.00[JPT][hapmap]
rs9855772	1.00[JPT][hapmap]
rs9866987	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv877516	chr3:134689420-134918522	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134693800-134707400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr3:134694000-134707000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:134694200-134709800	Weak transcription	Brain Germinal Matrix	brain
4	chr3:134697800-134709600	Weak transcription	GM12878-XiMat	blood
5	chr3:134698000-134704600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr3:134700000-134704000	Weak transcription	Aorta	Aorta
7	chr3:134700400-134706400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:134702600-134704200	Weak transcription	Fetal Brain Male	brain
9	chr3:134702600-134704600	Weak transcription	Fetal Brain Female	brain
10	chr3:134702600-134707800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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