Variant report

Variant	rs4956305
Chromosome Location	chr4:142733937-142733938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10010469	1.00[ASN][1000 genomes]
rs10028670	1.00[ASN][1000 genomes]
rs1040257	1.00[ASN][1000 genomes]
rs12508955	1.00[ASN][1000 genomes]
rs1493024	1.00[ASN][1000 genomes]
rs1500835	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519553	1.00[ASN][1000 genomes]
rs1850853	1.00[ASN][1000 genomes]
rs2087849	1.00[ASN][1000 genomes]
rs2254514	1.00[ASN][1000 genomes]
rs4055041	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4956404	1.00[ASN][1000 genomes]
rs4956407	1.00[ASN][1000 genomes]
rs6841454	1.00[ASN][1000 genomes]
rs7661408	1.00[ASN][1000 genomes]
rs7688250	1.00[ASN][1000 genomes]
rs937177	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401979	chr4:142434442-142803321	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1027004	chr4:142487721-143007320	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv830095	chr4:142695078-142884988	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142729200-142735600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:142732600-142734600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:142732800-142735600	Weak transcription	Osteobl	bone
4	chr4:142733600-142735400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr4:142733800-142735600	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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