Variant report

Variant	rs495763
Chromosome Location	chr6:143027866-143027867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12333188	1.00[ASN][1000 genomes]
rs17071986	1.00[ASN][1000 genomes]
rs2328374	1.00[ASN][1000 genomes]
rs62430713	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830828	chr6:142970134-143116517	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143014400-143028200	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr6:143018800-143029000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:143021800-143028800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:143024000-143028400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:143024600-143028200	Weak transcription	Fetal Lung	lung
6	chr6:143024600-143028600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:143024800-143028400	Weak transcription	Fetal Brain Male	brain
8	chr6:143024800-143039800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:143025800-143028400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:143025800-143028600	Enhancers	Primary hematopoietic stem cells	blood
11	chr6:143026400-143028400	Enhancers	Primary B cells from cord blood	blood
12	chr6:143026600-143028000	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr6:143027000-143028800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr6:143027200-143028000	Enhancers	Duodenum Mucosa	Duodenum
15	chr6:143027400-143029000	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr6:143027600-143029200	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr6:143027600-143033000	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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