Variant report

Variant	rs4957795
Chromosome Location	chr5:108371919-108371920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11948684	0.81[LWK][hapmap];0.88[YRI][hapmap]
rs11951285	1.00[YRI][hapmap]
rs11951595	0.81[LWK][hapmap];1.00[YRI][hapmap]
rs11954988	1.00[YRI][hapmap]
rs11955924	1.00[YRI][hapmap]
rs11958129	0.81[LWK][hapmap];1.00[YRI][hapmap]
rs11960400	1.00[YRI][hapmap]
rs12153527	1.00[YRI][hapmap]
rs12153646	1.00[YRI][hapmap]
rs3822684	0.81[LWK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108350800-108390400	Weak transcription	HSMMtube	muscle
2	chr5:108352400-108381400	Weak transcription	Fetal Lung	lung
3	chr5:108356000-108399000	Weak transcription	HSMM	muscle
4	chr5:108356400-108389200	Weak transcription	Primary B cells from cord blood	blood
5	chr5:108360200-108374000	Weak transcription	HUVEC	blood vessel
6	chr5:108360400-108373400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:108360400-108381200	Weak transcription	Adipose Nuclei	Adipose
8	chr5:108360400-108389000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:108360400-108389400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr5:108360400-108389600	Weak transcription	Brain Angular Gyrus	brain
11	chr5:108360400-108389800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr5:108360400-108389800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr5:108360400-108400400	Weak transcription	NHEK	skin
14	chr5:108360400-108404800	Weak transcription	Colon Smooth Muscle	Colon
15	chr5:108360400-108425200	Weak transcription	Aorta	Aorta
16	chr5:108360600-108382400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr5:108360600-108385000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr5:108364600-108374000	Weak transcription	A549	lung
19	chr5:108365600-108389400	Weak transcription	HepG2	liver
20	chr5:108366600-108387200	Weak transcription	GM12878-XiMat	blood
21	chr5:108366800-108377400	Weak transcription	Fetal Heart	heart
22	chr5:108367000-108387000	Weak transcription	Left Ventricle	heart
23	chr5:108367800-108375200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr5:108368800-108387400	Weak transcription	Pancreas	Pancrea
25	chr5:108370800-108372200	Enhancers	Osteobl	bone
26	chr5:108371000-108372200	Enhancers	NHLF	lung
27	chr5:108371200-108372800	Enhancers	NHDF-Ad	bronchial
28	chr5:108371200-108387400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr5:108371600-108373800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr5:108371600-108381000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr5:108371600-108387600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr5:108371800-108372200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links