Variant report

Variant	rs4958312
Chromosome Location	chr5:151868579-151868580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 222 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:219)

rs_ID	r²[population]
rs10039253	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10065026	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10069107	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10072743	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10213914	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1035398	1.00[JPT][hapmap]
rs10476784	0.90[ASN][1000 genomes]
rs10515658	0.90[ASN][1000 genomes]
rs10515660	0.90[ASN][1000 genomes]
rs10515661	0.90[ASN][1000 genomes]
rs10515662	0.90[ASN][1000 genomes]
rs10515663	0.90[ASN][1000 genomes]
rs10515664	0.90[ASN][1000 genomes]
rs10515665	0.90[ASN][1000 genomes]
rs10515667	0.90[ASN][1000 genomes]
rs10515669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10515670	0.90[ASN][1000 genomes]
rs10515671	0.90[ASN][1000 genomes]
rs1156932	0.90[ASN][1000 genomes]
rs1156933	0.90[ASN][1000 genomes]
rs1319549	0.90[ASN][1000 genomes]
rs13354964	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13361745	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1363407	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1363408	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1363409	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1363413	0.82[ASN][1000 genomes]
rs1363420	0.90[ASN][1000 genomes]
rs1363421	0.90[ASN][1000 genomes]
rs1422340	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1422341	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1422342	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1422343	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1422344	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1422356	0.90[ASN][1000 genomes]
rs1422357	0.90[ASN][1000 genomes]
rs1422371	0.90[ASN][1000 genomes]
rs1541651	0.90[ASN][1000 genomes]
rs1541652	0.90[ASN][1000 genomes]
rs1541653	0.90[ASN][1000 genomes]
rs1592896	0.82[ASN][1000 genomes]
rs17113223	0.85[ASN][1000 genomes]
rs17113291	1.00[JPT][hapmap]
rs17447016	0.82[ASN][1000 genomes]
rs17448379	0.90[ASN][1000 genomes]
rs17448407	0.90[ASN][1000 genomes]
rs17448511	0.90[ASN][1000 genomes]
rs17448739	0.90[ASN][1000 genomes]
rs17448815	0.90[ASN][1000 genomes]
rs17451282	1.00[JPT][hapmap]
rs17451303	1.00[JPT][hapmap]
rs17544525	0.81[ASN][1000 genomes]
rs17545297	0.90[ASN][1000 genomes]
rs17545332	0.90[ASN][1000 genomes]
rs17545367	0.90[ASN][1000 genomes]
rs17545665	0.90[ASN][1000 genomes]
rs17545881	0.90[ASN][1000 genomes]
rs17546335	0.90[ASN][1000 genomes]
rs17546405	0.90[ASN][1000 genomes]
rs17548153	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17548209	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17549488	1.00[JPT][hapmap]
rs1895245	0.90[ASN][1000 genomes]
rs1946224	0.90[ASN][1000 genomes]
rs1946225	0.90[ASN][1000 genomes]
rs2080929	0.90[ASN][1000 genomes]
rs2080930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2194084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2348421	0.90[ASN][1000 genomes]
rs2348422	0.90[ASN][1000 genomes]
rs2348425	0.90[ASN][1000 genomes]
rs2348426	0.90[ASN][1000 genomes]
rs28374977	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28495602	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28639501	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3763130	0.90[ASN][1000 genomes]
rs3792907	0.90[ASN][1000 genomes]
rs3828684	0.90[ASN][1000 genomes]
rs41290593	0.90[ASN][1000 genomes]
rs4392608	0.90[ASN][1000 genomes]
rs4958303	0.90[ASN][1000 genomes]
rs4958304	0.90[ASN][1000 genomes]
rs4958305	0.90[ASN][1000 genomes]
rs4958306	0.90[ASN][1000 genomes]
rs4958307	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4958308	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4958311	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958314	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958531	0.90[ASN][1000 genomes]
rs4958532	0.90[ASN][1000 genomes]
rs4958534	0.90[ASN][1000 genomes]
rs4958535	0.90[ASN][1000 genomes]
rs4958536	0.90[ASN][1000 genomes]
rs4958537	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs4958541	0.90[ASN][1000 genomes]
rs4958543	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4958544	0.90[ASN][1000 genomes]
rs4958546	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4958547	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4958548	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55687380	0.90[ASN][1000 genomes]
rs55689355	0.90[ASN][1000 genomes]
rs55696776	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55715312	0.90[ASN][1000 genomes]
rs55726523	0.86[ASN][1000 genomes]
rs55761989	0.90[ASN][1000 genomes]
rs55846431	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55893124	0.90[ASN][1000 genomes]
rs55911705	0.90[ASN][1000 genomes]
rs55917590	0.82[ASN][1000 genomes]
rs56035517	0.90[ASN][1000 genomes]
rs56035552	0.90[ASN][1000 genomes]
rs56074869	0.90[ASN][1000 genomes]
rs56091570	0.90[ASN][1000 genomes]
rs56125782	0.90[ASN][1000 genomes]
rs56211663	0.90[ASN][1000 genomes]
rs56245652	0.90[ASN][1000 genomes]
rs56275648	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56382127	0.90[ASN][1000 genomes]
rs56392306	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59365202	0.90[ASN][1000 genomes]
rs6864518	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6864702	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6884899	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6886963	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs716256	0.90[ASN][1000 genomes]
rs716257	0.90[ASN][1000 genomes]
rs72791404	0.90[ASN][1000 genomes]
rs72791406	0.90[ASN][1000 genomes]
rs72791407	0.90[ASN][1000 genomes]
rs72791408	0.90[ASN][1000 genomes]
rs72791409	0.90[ASN][1000 genomes]
rs72791410	0.90[ASN][1000 genomes]
rs72791411	0.90[ASN][1000 genomes]
rs72791413	0.90[ASN][1000 genomes]
rs72791415	0.90[ASN][1000 genomes]
rs72791419	0.90[ASN][1000 genomes]
rs72791420	0.90[ASN][1000 genomes]
rs72791421	0.90[ASN][1000 genomes]
rs72791422	0.90[ASN][1000 genomes]
rs72791423	0.90[ASN][1000 genomes]
rs72791424	0.90[ASN][1000 genomes]
rs72791425	0.90[ASN][1000 genomes]
rs72791429	0.90[ASN][1000 genomes]
rs72791432	0.90[ASN][1000 genomes]
rs72791434	0.90[ASN][1000 genomes]
rs72791435	0.90[ASN][1000 genomes]
rs72791441	0.90[ASN][1000 genomes]
rs72791442	0.90[ASN][1000 genomes]
rs72791445	0.90[ASN][1000 genomes]
rs72791446	0.90[ASN][1000 genomes]
rs72791447	0.90[ASN][1000 genomes]
rs72791449	0.90[ASN][1000 genomes]
rs72791451	0.90[ASN][1000 genomes]
rs72791452	0.90[ASN][1000 genomes]
rs72791454	0.90[ASN][1000 genomes]
rs72791456	0.90[ASN][1000 genomes]
rs72791458	0.90[ASN][1000 genomes]
rs72791461	0.90[ASN][1000 genomes]
rs72791463	0.90[ASN][1000 genomes]
rs72791464	0.90[ASN][1000 genomes]
rs72791468	0.90[ASN][1000 genomes]
rs72791470	0.90[ASN][1000 genomes]
rs72791475	0.90[ASN][1000 genomes]
rs72791477	0.90[ASN][1000 genomes]
rs72791485	0.90[ASN][1000 genomes]
rs72791486	0.90[ASN][1000 genomes]
rs72791488	0.90[ASN][1000 genomes]
rs72791490	0.90[ASN][1000 genomes]
rs72791492	0.90[ASN][1000 genomes]
rs72791494	0.90[ASN][1000 genomes]
rs72791495	0.90[ASN][1000 genomes]
rs72791498	0.86[ASN][1000 genomes]
rs72791499	0.90[ASN][1000 genomes]
rs72793405	0.90[ASN][1000 genomes]
rs72793406	0.90[ASN][1000 genomes]
rs72793407	0.90[ASN][1000 genomes]
rs72793408	0.90[ASN][1000 genomes]
rs72793437	0.90[ASN][1000 genomes]
rs72793438	0.90[ASN][1000 genomes]
rs72793439	0.86[ASN][1000 genomes]
rs72793455	0.90[ASN][1000 genomes]
rs72793460	0.90[ASN][1000 genomes]
rs72793462	0.90[ASN][1000 genomes]
rs72793463	0.90[ASN][1000 genomes]
rs72793466	0.90[ASN][1000 genomes]
rs72793468	0.90[ASN][1000 genomes]
rs72793469	0.90[ASN][1000 genomes]
rs72793472	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72793476	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72793480	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72793481	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72793485	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72793487	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72793488	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72793497	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72808307	0.82[ASN][1000 genomes]
rs72808310	0.82[ASN][1000 genomes]
rs72808322	0.82[ASN][1000 genomes]
rs72808324	0.82[ASN][1000 genomes]
rs72808326	0.82[ASN][1000 genomes]
rs72808328	0.82[ASN][1000 genomes]
rs72808330	0.82[ASN][1000 genomes]
rs72808338	0.82[ASN][1000 genomes]
rs72808345	0.90[ASN][1000 genomes]
rs72808347	0.85[ASN][1000 genomes]
rs72808348	0.85[ASN][1000 genomes]
rs731117	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7356769	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs766895	0.82[ASN][1000 genomes]
rs888877	0.85[ASN][1000 genomes]
rs888878	0.90[ASN][1000 genomes]
rs888879	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs957211	0.90[ASN][1000 genomes]
rs982418	0.90[ASN][1000 genomes]
rs982714	0.90[ASN][1000 genomes]
rs982715	0.90[ASN][1000 genomes]
rs982716	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv432815	chr5:151682807-151875807	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv432816	chr5:151691807-151875807	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4958312	NMUR2	cis	Thyroid	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151867000-151868600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr5:151868400-151868600	Enhancers	Brain Cingulate Gyrus	brain

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