Variant report

Variant	rs4958920
Chromosome Location	chr5:69375254-69375255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 162 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:162 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32846	chr5:68829015-69705591	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv1795268	chr5:68955543-69681690	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv13923	chr5:68957466-69497579	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	esv1826478	chr5:68958370-69461956	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	esv1802173	chr5:68958423-69705657	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv881775	chr5:68963262-69403982	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv881776	chr5:68977250-69405087	Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers	TF binding region CpG island lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv881777	chr5:68977250-69470589	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv881779	chr5:68991341-69753111	Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
10	nsv881781	chr5:68995989-69420111	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
11	nsv881788	chr5:69063595-69470589	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
12	nsv881789	chr5:69075763-69507207	Strong transcription ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
13	nsv881796	chr5:69114646-69535177	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
14	nsv881797	chr5:69123487-69392845	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription	TF binding region CpG island lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
15	nsv881798	chr5:69123487-69400453	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
16	nsv881799	chr5:69148904-69400453	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
17	nsv881800	chr5:69148904-69405087	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
18	nsv881801	chr5:69148904-69486566	Weak transcription Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
19	nsv881802	chr5:69154987-69400453	Strong transcription Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
20	nsv881803	chr5:69154987-69403982	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
21	nsv598472	chr5:69154987-69475015	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
22	esv1810000	chr5:69164017-69603075	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription	TF binding region CpG island lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
23	nsv598473	chr5:69164101-69397252	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
24	esv19631	chr5:69194688-69411939	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
25	nsv881804	chr5:69197321-69440806	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
26	nsv508367	chr5:69203497-69974573	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
27	esv3392165	chr5:69211346-69498644	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription	TF binding region CpG island lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
28	esv20207	chr5:69212012-69497694	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
29	nsv881805	chr5:69212209-69392845	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
30	nsv881806	chr5:69212209-69400453	Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers	TF binding region CpG island lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
31	nsv881807	chr5:69212209-69403982	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
32	nsv881808	chr5:69212209-69420111	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers	TF binding region CpG island lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
33	nsv881809	chr5:69212209-69507207	Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Enhancers	TF binding region CpG island lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
34	nsv881810	chr5:69212209-69677532	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
35	esv1850935	chr5:69212708-69464258	Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
36	nsv881811	chr5:69215959-69392845	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
37	nsv881812	chr5:69215959-69400453	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
38	nsv881813	chr5:69215959-69470589	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
39	nsv598475	chr5:69215959-69507207	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
40	esv1826620	chr5:69218852-69477962	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
41	esv1850154	chr5:69218852-69490865	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
42	nsv915651	chr5:69220692-69463228	Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
43	nsv881815	chr5:69227312-69392845	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
44	nsv881816	chr5:69227312-69400453	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers	TF binding region CpG island lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
45	nsv881817	chr5:69227312-69403982	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
46	nsv881818	chr5:69227312-69405087	Weak transcription Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
47	nsv881819	chr5:69227312-69420111	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
48	nsv881820	chr5:69227312-69697815	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
49	esv1832295	chr5:69229009-69614542	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers	TF binding region CpG island lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
50	esv1828416	chr5:69229009-69643299	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:69365800-69376600	Weak transcription	Ovary	ovary
2	chr5:69365800-69377400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:69366000-69376600	Weak transcription	Fetal Intestine Small	intestine
4	chr5:69366000-69376600	Weak transcription	Thymus	Thymus
5	chr5:69369000-69381000	Weak transcription	Fetal Muscle Leg	muscle
6	chr5:69369600-69381000	Weak transcription	Fetal Thymus	thymus
7	chr5:69370000-69377200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr5:69371000-69377200	Weak transcription	Placenta	Placenta
9	chr5:69372200-69375400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:69372200-69377200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:69372200-69381200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:69372200-69381800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr5:69372200-69382000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr5:69372200-69382200	Weak transcription	Left Ventricle	heart
15	chr5:69372200-69382200	Weak transcription	Dnd41	blood
16	chr5:69372200-69382600	Weak transcription	Liver	Liver
17	chr5:69372600-69407200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr5:69373200-69375800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr5:69373200-69375800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr5:69373200-69375800	Weak transcription	Pancreas	Pancrea
21	chr5:69373200-69375800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr5:69373200-69376000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr5:69373200-69376000	Weak transcription	Lung	lung
24	chr5:69373200-69376000	Weak transcription	Stomach Smooth Muscle	stomach
25	chr5:69373600-69375400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr5:69374000-69376600	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr5:69374200-69376600	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr5:69374200-69376600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr5:69374200-69376600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr5:69374200-69376800	Weak transcription	Primary T cells from cord blood	blood
31	chr5:69375000-69375600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr5:69375000-69375600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr5:69375000-69375600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr5:69375000-69375800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr5:69375000-69375800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
36	chr5:69375000-69375800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr5:69375200-69375400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr5:69375200-69375600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr5:69375200-69375600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr5:69375200-69375600	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr5:69375200-69375600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
42	chr5:69375200-69375600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr5:69375200-69375600	ZNF genes & repeats	Fetal Stomach	stomach
44	chr5:69375200-69375600	ZNF genes & repeats	K562	blood
45	chr5:69375200-69375800	Strong transcription	H1 Cell Line	embryonic stem cell

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