Variant report

Variant	rs4958982
Chromosome Location	chr5:177366001-177366002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10464113	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10464116	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11249783	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11738026	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11740972	0.88[AFR][1000 genomes]
rs11742168	0.84[AFR][1000 genomes]
rs13157329	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13157464	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13157845	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13167295	0.82[ASN][1000 genomes]
rs13190413	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4246052	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4318803	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4318804	0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4327608	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4428434	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4958942	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4958944	0.82[ASN][1000 genomes]
rs4958945	0.84[ASN][1000 genomes]
rs4958946	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4958947	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4958948	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4958980	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4958983	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4958984	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4958992	0.86[ASN][1000 genomes]
rs4958995	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4958999	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4959000	0.81[ASN][1000 genomes]
rs62397830	0.83[ASN][1000 genomes]
rs62397831	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62397832	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6601187	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6601188	0.93[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6861547	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6864280	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6866295	0.87[ASN][1000 genomes]
rs6875120	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6875636	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6880829	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6881018	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6885392	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6891157	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6896989	0.84[AFR][1000 genomes]
rs6898992	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs71591890	0.81[ASN][1000 genomes]
rs7703493	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7705931	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7706237	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7706255	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7718261	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7730346	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7733233	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9764397	0.84[AFR][1000 genomes]
rs9764398	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9765519	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024444	chr5:176751921-177427715	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
2	esv2752795	chr5:176898619-177488281	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
3	nsv1033211	chr5:177133646-177383386	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1030383	chr5:177310325-177571254	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv883184	chr5:177311043-177488281	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv883185	chr5:177357964-177401509	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv521629	chr5:177364884-177396200	Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv3377185	chr5:177365371-177368219	Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177364800-177366200	Enhancers	Primary T cells fromperipheralblood	blood
2	chr5:177365400-177366200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:177365400-177366200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr5:177365400-177366200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr5:177365400-177366200	Bivalent Enhancer	Fetal Muscle Leg	muscle
6	chr5:177365600-177366200	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr5:177365600-177366200	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr5:177365600-177366200	Bivalent Enhancer	Fetal Stomach	stomach
9	chr5:177365600-177366400	Enhancers	Primary B cells from peripheral blood	blood
10	chr5:177365600-177366800	Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr5:177365600-177366800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
12	chr5:177365600-177366800	Enhancers	Primary B cells from cord blood	blood
13	chr5:177365600-177367000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:177365600-177368200	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr5:177365800-177366200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr5:177365800-177366200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr5:177365800-177366200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr5:177365800-177366200	Enhancers	Primary T cells from cord blood	blood
19	chr5:177365800-177366200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr5:177365800-177366200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr5:177365800-177366200	Enhancers	Liver	Liver
22	chr5:177365800-177366200	Bivalent Enhancer	Fetal Brain Male	brain
23	chr5:177365800-177366200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr5:177365800-177366200	Enhancers	Gastric	stomach
25	chr5:177365800-177366200	Flanking Active TSS	Pancreas	Pancrea
26	chr5:177365800-177366400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
27	chr5:177365800-177366400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr5:177365800-177366400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr5:177365800-177366400	Enhancers	Fetal Lung	lung
30	chr5:177365800-177366600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
31	chr5:177365800-177367000	Active TSS	Brain Germinal Matrix	brain
32	chr5:177365800-177367200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
33	chr5:177365800-177367200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
34	chr5:177365800-177367200	Active TSS	Muscle Satellite Cultured Cells	--
35	chr5:177365800-177367200	Bivalent Enhancer	Fetal Thymus	thymus
36	chr5:177365800-177367400	Active TSS	NHLF	lung
37	chr5:177366000-177366200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
38	chr5:177366000-177366200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
39	chr5:177366000-177366200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr5:177366000-177366200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr5:177366000-177366200	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr5:177366000-177366200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
43	chr5:177366000-177366200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
44	chr5:177366000-177366200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr5:177366000-177366200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr5:177366000-177366200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
47	chr5:177366000-177366200	Enhancers	Esophagus	oesophagus
48	chr5:177366000-177366200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
49	chr5:177366000-177366200	Flanking Active TSS	Thymus	Thymus
50	chr5:177366000-177366400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain

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