Variant report

Variant	rs4959271
Chromosome Location	chr6:4104063-4104064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:4101592..4105283-chr6:4133279..4135546,3	K562	blood:

Variant related genes	Relation type
ENSG00000198721	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs101418	0.82[ASN][1000 genomes]
rs11755877	0.82[ASN][1000 genomes]
rs1204951	0.83[ASN][1000 genomes]
rs2326408	0.89[ASN][1000 genomes]
rs2745455	0.80[ASN][1000 genomes]
rs2783063	0.82[ASN][1000 genomes]
rs2783073	0.89[ASN][1000 genomes]
rs28878015	0.98[ASN][1000 genomes]
rs582008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs583782	0.98[ASN][1000 genomes]
rs583881	0.98[ASN][1000 genomes]
rs584585	0.89[ASN][1000 genomes]
rs608195	0.84[ASN][1000 genomes]
rs611500	0.89[ASN][1000 genomes]
rs612022	0.89[ASN][1000 genomes]
rs612477	0.84[ASN][1000 genomes]
rs613028	0.86[ASN][1000 genomes]
rs613260	0.89[ASN][1000 genomes]
rs613709	0.89[ASN][1000 genomes]
rs617604	0.81[ASN][1000 genomes]
rs617790	0.89[ASN][1000 genomes]
rs619439	0.89[ASN][1000 genomes]
rs619483	0.82[ASN][1000 genomes]
rs619873	0.89[ASN][1000 genomes]
rs620484	0.89[ASN][1000 genomes]
rs621205	0.98[ASN][1000 genomes]
rs626080	0.86[ASN][1000 genomes]
rs627259	0.84[ASN][1000 genomes]
rs629362	0.89[ASN][1000 genomes]
rs633290	0.89[ASN][1000 genomes]
rs634114	0.82[ASN][1000 genomes]
rs634698	0.89[ASN][1000 genomes]
rs634970	0.98[ASN][1000 genomes]
rs638329	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs643232	0.89[ASN][1000 genomes]
rs646385	0.98[ASN][1000 genomes]
rs648900	0.89[ASN][1000 genomes]
rs649725	0.89[ASN][1000 genomes]
rs659025	0.89[ASN][1000 genomes]
rs659051	0.98[ASN][1000 genomes]
rs659305	0.89[ASN][1000 genomes]
rs660560	0.89[ASN][1000 genomes]
rs660957	0.98[ASN][1000 genomes]
rs661404	0.89[ASN][1000 genomes]
rs661657	0.83[ASN][1000 genomes]
rs662834	0.82[ASN][1000 genomes]
rs664299	0.87[ASN][1000 genomes]
rs664635	0.98[ASN][1000 genomes]
rs664898	0.98[ASN][1000 genomes]
rs665894	0.80[ASN][1000 genomes]
rs668070	0.82[ASN][1000 genomes]
rs674543	0.80[ASN][1000 genomes]
rs676683	0.89[ASN][1000 genomes]
rs678285	0.98[ASN][1000 genomes]
rs679303	0.98[ASN][1000 genomes]
rs689308	0.89[ASN][1000 genomes]
rs694058	0.98[ASN][1000 genomes]
rs694903	0.84[ASN][1000 genomes]
rs707991	0.84[ASN][1000 genomes]
rs7166	0.89[ASN][1000 genomes]
rs7744628	0.89[ASN][1000 genomes]
rs7757606	0.89[ASN][1000 genomes]
rs853416	0.89[ASN][1000 genomes]
rs853417	0.89[ASN][1000 genomes]
rs853418	0.98[ASN][1000 genomes]
rs9328220	0.89[ASN][1000 genomes]
rs9405219	0.82[ASN][1000 genomes]
rs9405701	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532020	chr6:3417520-4140257	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1022968	chr6:3862744-4272502	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv538106	chr6:3862744-4272502	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv1030104	chr6:4062894-4240269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	esv2422231	chr6:4100333-4233454	Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	esv2422457	chr6:4100333-4377396	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4100800-4104400	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr6:4101800-4110200	Weak transcription	Stomach Mucosa	stomach
3	chr6:4102600-4113800	Weak transcription	Psoas Muscle	Psoas
4	chr6:4103000-4104600	Enhancers	Pancreas	Pancrea
5	chr6:4103000-4104600	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr6:4103200-4104600	Enhancers	Fetal Brain Female	brain
7	chr6:4103400-4104200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:4103400-4109800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:4103400-4110000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:4103400-4115400	Weak transcription	Fetal Brain Male	brain
11	chr6:4103400-4115600	Weak transcription	Fetal Stomach	stomach
12	chr6:4103400-4115600	Weak transcription	Gastric	stomach
13	chr6:4103800-4105000	Enhancers	HepG2	liver
14	chr6:4103800-4108400	Weak transcription	Fetal Intestine Small	intestine
15	chr6:4104000-4104600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr6:4104000-4104800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:4104000-4104800	Enhancers	HMEC	breast
18	chr6:4104000-4104800	Enhancers	NHEK	skin

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