Variant report

Variant	rs4959911
Chromosome Location	chr6:3965812-3965813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13205752	1.00[CEU][hapmap]
rs9328208	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9378831	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9378834	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9405214	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9503854	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532020	chr6:3417520-4140257	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1022968	chr6:3862744-4272502	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv538106	chr6:3862744-4272502	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:3964800-3987400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:3965000-3966400	Enhancers	NHDF-Ad	bronchial
3	chr6:3965200-3966200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:3965200-3966800	Enhancers	HUVEC	blood vessel
5	chr6:3965400-3966000	Enhancers	Osteobl	bone
6	chr6:3965400-3966400	Enhancers	HepG2	liver
7	chr6:3965600-3966000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:3965600-3966000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:3965600-3966000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:3965600-3966000	Enhancers	Spleen	Spleen
11	chr6:3965600-3966200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:3965600-3966200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:3965800-3966000	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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