Variant report

Variant	rs4960042
Chromosome Location	chr6:4736583-4736584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10458178	0.93[ASN][1000 genomes]
rs11242974	0.93[ASN][1000 genomes]
rs11242977	0.93[ASN][1000 genomes]
rs11242978	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11755832	0.93[ASN][1000 genomes]
rs11759784	0.93[ASN][1000 genomes]
rs12196896	0.91[ASN][1000 genomes]
rs12208133	0.93[ASN][1000 genomes]
rs12211355	0.93[ASN][1000 genomes]
rs12214737	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35640627	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35836829	0.93[ASN][1000 genomes]
rs6597094	0.93[ASN][1000 genomes]
rs6597095	0.91[ASN][1000 genomes]
rs6915353	0.93[ASN][1000 genomes]
rs6917691	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6931290	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6931832	0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6932591	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6937790	0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6938514	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6941511	0.93[ASN][1000 genomes]
rs6941562	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7745237	0.93[ASN][1000 genomes]
rs7748184	0.93[ASN][1000 genomes]
rs7748335	0.93[ASN][1000 genomes]
rs7748862	0.93[ASN][1000 genomes]
rs7762773	0.93[ASN][1000 genomes]
rs7762927	0.93[ASN][1000 genomes]
rs7767658	0.93[ASN][1000 genomes]
rs7767968	0.93[ASN][1000 genomes]
rs907841	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9328271	0.93[ASN][1000 genomes]
rs9328272	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9328273	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9328274	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9378409	0.93[ASN][1000 genomes]
rs9378410	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9378411	0.84[JPT][hapmap];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9378906	0.91[ASN][1000 genomes]
rs9378907	0.93[ASN][1000 genomes]
rs9378908	0.93[ASN][1000 genomes]
rs9378909	0.93[ASN][1000 genomes]
rs9378910	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9392062	0.93[ASN][1000 genomes]
rs9392064	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9392626	0.93[ASN][1000 genomes]
rs9392628	0.93[ASN][1000 genomes]
rs9392629	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9392630	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9392631	0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9392632	0.92[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9392634	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9392635	0.80[ASW][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9405764	0.93[ASN][1000 genomes]
rs9405765	0.93[ASN][1000 genomes]
rs9405766	0.93[ASN][1000 genomes]
rs9405767	0.93[ASN][1000 genomes]
rs9405768	0.93[ASN][1000 genomes]
rs9405769	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9405770	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9405771	0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9405772	0.92[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9405773	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9405774	0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9405776	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9504222	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv3429586	chr6:4719363-4792438	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1017938	chr6:4729592-4774914	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4733600-4743000	Weak transcription	Right Atrium	heart
2	chr6:4734000-4740600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:4735200-4740200	Weak transcription	K562	blood
4	chr6:4735400-4743000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:4735800-4736800	Enhancers	A549	lung
6	chr6:4736400-4736600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:4736400-4736800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:4736400-4741600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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