Variant report

Variant	rs4960130
Chromosome Location	chr6:5721647-5721648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1977059	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2205867	0.86[AMR][1000 genomes]
rs6912014	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6935701	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6942212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7771512	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs965149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs965150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5707600-5724000	Weak transcription	Thymus	Thymus
2	chr6:5713800-5723400	Weak transcription	Primary T cells from cord blood	blood
3	chr6:5714600-5723600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:5714800-5722800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:5717400-5729000	Weak transcription	Fetal Stomach	stomach
6	chr6:5717600-5729000	Weak transcription	Fetal Lung	lung
7	chr6:5717600-5729600	Weak transcription	Brain Substantia Nigra	brain
8	chr6:5717800-5723600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:5717800-5725600	Weak transcription	Fetal Intestine Small	intestine
10	chr6:5718000-5729200	Weak transcription	NHEK	skin
11	chr6:5719000-5723800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:5719200-5723400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:5719400-5723200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:5719600-5722800	Weak transcription	Primary B cells from cord blood	blood
15	chr6:5720000-5722400	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr6:5720000-5722600	Weak transcription	Primary B cells from peripheral blood	blood
17	chr6:5720000-5722600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr6:5720600-5723400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:5720600-5723600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr6:5720600-5723600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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