Variant report

Variant	rs4961537
Chromosome Location	chr9:17317041-17317042
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10114324	0.87[ASN][1000 genomes]
rs10756861	0.87[ASN][1000 genomes]
rs10756862	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10756863	0.87[ASN][1000 genomes]
rs10756864	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10756865	0.89[ASN][1000 genomes]
rs10810753	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10962977	0.82[ASN][1000 genomes]
rs10962979	0.84[ASN][1000 genomes]
rs10962981	0.82[ASN][1000 genomes]
rs10962984	0.85[ASN][1000 genomes]
rs10962985	0.85[ASN][1000 genomes]
rs10962986	0.85[ASN][1000 genomes]
rs10962987	0.85[ASN][1000 genomes]
rs10962989	0.85[ASN][1000 genomes]
rs10963010	0.84[ASN][1000 genomes]
rs10963011	0.86[ASN][1000 genomes]
rs10963012	0.86[ASN][1000 genomes]
rs10963013	0.86[ASN][1000 genomes]
rs10963014	0.86[ASN][1000 genomes]
rs10963028	0.89[ASN][1000 genomes]
rs1113379	0.89[ASN][1000 genomes]
rs1113380	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1113382	0.89[ASN][1000 genomes]
rs1348279	0.84[ASN][1000 genomes]
rs1413418	0.87[ASN][1000 genomes]
rs1759452	0.87[ASN][1000 genomes]
rs1759453	0.87[ASN][1000 genomes]
rs1759457	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1759458	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1759459	0.87[ASN][1000 genomes]
rs1759460	0.87[ASN][1000 genomes]
rs1759461	0.87[ASN][1000 genomes]
rs1759462	0.87[ASN][1000 genomes]
rs1759463	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1759465	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1759616	0.87[ASN][1000 genomes]
rs1759617	0.86[ASN][1000 genomes]
rs1759619	0.87[ASN][1000 genomes]
rs1759626	0.86[ASN][1000 genomes]
rs1930639	0.85[ASN][1000 genomes]
rs1930643	0.87[ASN][1000 genomes]
rs1930644	0.87[ASN][1000 genomes]
rs1930645	0.87[ASN][1000 genomes]
rs1930646	0.87[ASN][1000 genomes]
rs2083695	0.80[ASN][1000 genomes]
rs2095145	0.85[ASN][1000 genomes]
rs2099859	0.80[ASN][1000 genomes]
rs2104914	0.85[ASN][1000 genomes]
rs2483208	0.86[ASN][1000 genomes]
rs2779774	0.85[ASN][1000 genomes]
rs2779779	0.85[ASN][1000 genomes]
rs2780204	0.87[ASN][1000 genomes]
rs2780205	0.86[ASN][1000 genomes]
rs2780207	0.85[ASN][1000 genomes]
rs2990958	0.86[ASN][1000 genomes]
rs3808785	0.87[ASN][1000 genomes]
rs3891457	0.82[ASN][1000 genomes]
rs4621917	0.89[ASN][1000 genomes]
rs4961554	0.80[ASN][1000 genomes]
rs55829722	0.85[ASN][1000 genomes]
rs582134	0.85[ASN][1000 genomes]
rs585682	0.86[ASN][1000 genomes]
rs593552	0.85[ASN][1000 genomes]
rs599626	0.86[ASN][1000 genomes]
rs600041	0.86[ASN][1000 genomes]
rs600133	0.86[ASN][1000 genomes]
rs601960	0.86[ASN][1000 genomes]
rs606382	0.86[ASN][1000 genomes]
rs610175	0.85[ASN][1000 genomes]
rs613966	0.86[ASN][1000 genomes]
rs614412	0.86[ASN][1000 genomes]
rs614471	0.86[ASN][1000 genomes]
rs619357	0.87[ASN][1000 genomes]
rs631300	0.87[ASN][1000 genomes]
rs632176	0.87[ASN][1000 genomes]
rs632255	0.86[ASN][1000 genomes]
rs632313	0.86[ASN][1000 genomes]
rs634383	0.87[ASN][1000 genomes]
rs634446	0.86[ASN][1000 genomes]
rs636093	0.85[ASN][1000 genomes]
rs642582	0.84[ASN][1000 genomes]
rs643776	0.86[ASN][1000 genomes]
rs646025	0.87[ASN][1000 genomes]
rs647013	0.86[ASN][1000 genomes]
rs6475127	0.87[ASN][1000 genomes]
rs6475129	0.87[ASN][1000 genomes]
rs664447	0.83[ASN][1000 genomes]
rs672799	0.86[ASN][1000 genomes]
rs673587	0.86[ASN][1000 genomes]
rs677490	0.86[ASN][1000 genomes]
rs679666	0.85[ASN][1000 genomes]
rs7018856	0.82[ASN][1000 genomes]
rs7027051	0.86[ASN][1000 genomes]
rs7027539	0.80[ASN][1000 genomes]
rs7042700	0.84[ASN][1000 genomes]
rs7047093	0.80[ASN][1000 genomes]
rs7848118	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7865807	0.80[ASN][1000 genomes]
rs7874597	0.87[ASN][1000 genomes]
rs870270	0.85[ASN][1000 genomes]
rs9407792	0.85[ASN][1000 genomes]
rs9407793	0.85[ASN][1000 genomes]
rs9407794	0.82[ASN][1000 genomes]
rs9407804	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv892661	chr9:17134245-17532840	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv471287	chr9:17165698-17708814	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv466269	chr9:17165698-17710407	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv892662	chr9:17168867-17329964	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv466270	chr9:17236376-17377629	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv613694	chr9:17236376-17377629	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv892663	chr9:17243746-17329964	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv892665	chr9:17250170-17371690	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv613695	chr9:17273731-17348412	Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17262800-17339800	Weak transcription	Left Ventricle	heart
2	chr9:17274800-17323200	Weak transcription	Aorta	Aorta
3	chr9:17284400-17344800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr9:17292200-17367200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:17294000-17317600	Weak transcription	Liver	Liver
6	chr9:17294000-17334000	Weak transcription	Fetal Stomach	stomach
7	chr9:17294000-17346000	Weak transcription	Fetal Muscle Leg	muscle
8	chr9:17300800-17318600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:17301200-17332200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr9:17308600-17322600	Weak transcription	Fetal Lung	lung
11	chr9:17311800-17318200	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr9:17313400-17333200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:17314800-17319000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:17315400-17347400	Weak transcription	Colon Smooth Muscle	Colon
15	chr9:17315400-17349800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links