Variant report

Variant	rs4963659
Chromosome Location	chr12:26403651-26403652
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11048441	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1355734	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1480040	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1480044	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1480045	0.81[EUR][1000 genomes]
rs1533249	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1913234	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2343875	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7295825	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs753616	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7976541	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817432	chr12:26355515-26873664	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26394000-26404600	Weak transcription	Pancreas	Pancrea
2	chr12:26401000-26404800	Weak transcription	Stomach Mucosa	stomach
3	chr12:26401200-26403800	Weak transcription	Osteobl	bone
4	chr12:26402800-26408400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr12:26403600-26403800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:26403600-26403800	Enhancers	NHEK	skin
7	chr12:26403600-26404800	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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