Variant report

Variant	rs4963875
Chromosome Location	chr12:25512503-25512504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10842540	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11047971	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11615984	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12307973	0.81[EUR][1000 genomes]
rs12368200	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12369788	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12580850	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2029452	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34561310	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35141130	0.86[AMR][1000 genomes]
rs36051884	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4397949	0.80[EUR][1000 genomes]
rs58760211	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6487475	0.86[EUR][1000 genomes]
rs7961171	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv976719	chr12:25482467-25552186	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv898929	chr12:25499342-25634138	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv898930	chr12:25510311-25645817	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25505600-25518200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr12:25511000-25516600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr12:25511600-25515400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr12:25511600-25515600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr12:25511600-25516800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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