Variant report

Variant	rs4968289
Chromosome Location	chr17:45037334-45037335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:45036287..45039128-chr17:45049347..45051795,2	K562	blood:
2	chr17:45035542..45037686-chr17:45103345..45105555,2	K562	blood:
3	chr17:45036943..45038451-chr17:45062574..45065133,2	K562	blood:
4	chr17:45034534..45039079-chr17:45040455..45044434,4	K562	blood:

Variant related genes	Relation type
ENSG00000264999	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11079743	1.00[EUR][1000 genomes]
rs1625900	1.00[EUR][1000 genomes]
rs1634270	1.00[EUR][1000 genomes]
rs1638447	1.00[EUR][1000 genomes]
rs1638449	1.00[EUR][1000 genomes]
rs1662595	0.94[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1662598	1.00[EUR][1000 genomes]
rs16941147	1.00[EUR][1000 genomes]
rs183199	1.00[EUR][1000 genomes]
rs197921	1.00[EUR][1000 genomes]
rs197933	1.00[EUR][1000 genomes]
rs197934	1.00[EUR][1000 genomes]
rs197940	1.00[EUR][1000 genomes]
rs2018281	1.00[EUR][1000 genomes]
rs2108922	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs221600	1.00[EUR][1000 genomes]
rs28377288	1.00[EUR][1000 genomes]
rs28740955	1.00[EUR][1000 genomes]
rs3851783	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4083002	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60458827	1.00[EUR][1000 genomes]
rs7212013	1.00[EUR][1000 genomes]
rs7214920	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs7221149	1.00[EUR][1000 genomes]
rs73316337	1.00[EUR][1000 genomes]
rs73987013	1.00[EUR][1000 genomes]
rs73987030	1.00[EUR][1000 genomes]
rs8064340	1.00[EUR][1000 genomes]
rs8064568	1.00[EUR][1000 genomes]
rs8071980	1.00[EUR][1000 genomes]
rs8078556	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8080767	1.00[EUR][1000 genomes]
rs858674	1.00[EUR][1000 genomes]
rs908360	1.00[EUR][1000 genomes]
rs9893406	1.00[EUR][1000 genomes]
rs9893495	1.00[EUR][1000 genomes]
rs9900809	1.00[EUR][1000 genomes]
rs9910543	1.00[EUR][1000 genomes]
rs9915693	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3492820	chr17:44174959-45161556	Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3492821	chr17:44174959-45161556	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	esv3502492	chr17:44305975-45169159	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	esv3502493	chr17:44305975-45169159	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
5	nsv531823	chr17:44485771-45067769	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv908562	chr17:44828931-45102413	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv949295	chr17:44836653-45080757	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
8	nsv1067211	chr17:44979111-45057620	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
9	nsv543378	chr17:44979111-45057620	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
10	nsv833466	chr17:45020360-45204537	Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
11	nsv1062983	chr17:45030095-45789543	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
12	nsv960497	chr17:45036696-45039225	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45012800-45040000	Weak transcription	Hela-S3	cervix
2	chr17:45021600-45039800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr17:45021800-45051800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr17:45022000-45039800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr17:45022800-45044400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr17:45022800-45045000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr17:45023000-45045400	Weak transcription	Ovary	ovary
8	chr17:45023200-45037600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr17:45027000-45039800	Weak transcription	Pancreas	Pancrea
10	chr17:45027200-45039800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr17:45027400-45054000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr17:45028000-45044400	Weak transcription	Primary T cells from cord blood	blood
13	chr17:45028600-45048800	Weak transcription	Esophagus	oesophagus
14	chr17:45029200-45037400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr17:45030400-45043800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr17:45034400-45045200	Weak transcription	HepG2	liver
17	chr17:45034600-45045600	Weak transcription	Fetal Intestine Small	intestine
18	chr17:45035200-45037400	Enhancers	Brain Anterior Caudate	brain
19	chr17:45035600-45037600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr17:45036000-45037600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr17:45036400-45043600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr17:45036400-45045800	Weak transcription	Fetal Brain Female	brain
23	chr17:45036400-45052400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr17:45036600-45054400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr17:45037000-45038000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr17:45037200-45037400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
27	chr17:45037200-45037400	ZNF genes & repeats	Aorta	Aorta
28	chr17:45037200-45037600	ZNF genes & repeats	A549	lung
29	chr17:45037200-45038000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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