Variant report

Variant	rs4968459
Chromosome Location	chr17:59991932-59991933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12452094	0.81[ASN][1000 genomes]
rs12452732	0.80[ASN][1000 genomes]
rs12452742	0.86[ASN][1000 genomes]
rs12600909	0.82[ASN][1000 genomes]
rs2271576	0.84[ASN][1000 genomes]
rs3744434	0.80[ASN][1000 genomes]
rs4968408	0.83[ASN][1000 genomes]
rs4968454	0.83[ASN][1000 genomes]
rs4968455	0.83[ASN][1000 genomes]
rs4968457	0.84[ASN][1000 genomes]
rs4968460	0.80[ASN][1000 genomes]
rs56794817	0.85[ASN][1000 genomes]
rs58085921	0.93[ASN][1000 genomes]
rs58624595	0.80[ASN][1000 genomes]
rs59080342	0.80[ASN][1000 genomes]
rs73332565	0.82[ASN][1000 genomes]
rs73332580	0.84[ASN][1000 genomes]
rs73332598	0.86[ASN][1000 genomes]
rs8080599	0.80[ASN][1000 genomes]
rs8081917	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv916786	chr17:59890834-60103687	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59941400-60004400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:59941400-60004400	Weak transcription	Aorta	Aorta
3	chr17:59941400-60004400	Weak transcription	Pancreas	Pancrea
4	chr17:59941600-60003600	Weak transcription	Stomach Mucosa	stomach
5	chr17:59941600-60004400	Weak transcription	Colonic Mucosa	Colon
6	chr17:59942600-60002800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr17:59951400-59992200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr17:59954400-60003800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr17:59959000-59996800	Weak transcription	Gastric	stomach
10	chr17:59959600-60003600	Weak transcription	Fetal Heart	heart
11	chr17:59966000-60004200	Weak transcription	Psoas Muscle	Psoas
12	chr17:59966200-59998000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr17:59974200-59993000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr17:59975400-60004600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr17:59976200-59992400	Strong transcription	HepG2	liver
16	chr17:59978600-60004400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr17:59980200-60003600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr17:59982000-59992400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr17:59982600-60001400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr17:59982600-60003600	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr17:59983000-59997000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr17:59983200-59992200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr17:59983600-60004600	Weak transcription	Spleen	Spleen
24	chr17:59984200-60003400	Weak transcription	HSMMtube	muscle
25	chr17:59985000-60004400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr17:59987800-59994400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr17:59987800-59994600	Weak transcription	Fetal Brain Male	brain
28	chr17:59987800-59995800	Weak transcription	Small Intestine	intestine
29	chr17:59987800-60002600	Weak transcription	NHEK	skin
30	chr17:59989000-59994800	Weak transcription	Ovary	ovary
31	chr17:59989000-59996600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr17:59989000-59996800	Weak transcription	Esophagus	oesophagus
33	chr17:59989000-60001600	Weak transcription	Brain Germinal Matrix	brain
34	chr17:59989200-59995400	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr17:59989200-59996600	Weak transcription	HSMM	muscle
36	chr17:59989200-59998000	Weak transcription	Fetal Kidney	kidney
37	chr17:59989200-59998600	Weak transcription	HMEC	breast
38	chr17:59989200-60001400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr17:59989200-60003400	Weak transcription	Colon Smooth Muscle	Colon
40	chr17:59989400-59994200	Weak transcription	Primary B cells from cord blood	blood
41	chr17:59989400-59994400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr17:59989400-59994400	Weak transcription	NH-A	brain
43	chr17:59989400-59994600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr17:59989400-59994600	Weak transcription	Thymus	Thymus
45	chr17:59989400-59994800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr17:59989400-59994800	Weak transcription	Brain Hippocampus Middle	brain
47	chr17:59989400-59994800	Weak transcription	Fetal Muscle Trunk	muscle
48	chr17:59989400-59995600	Weak transcription	Fetal Brain Female	brain
49	chr17:59989400-59995600	Weak transcription	Left Ventricle	heart
50	chr17:59989400-59996600	Weak transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links