Variant report

Variant	rs4968905
Chromosome Location	chr17:66604142-66604143
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12150134	0.82[EUR][1000 genomes]
rs2159332	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2907392	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2907393	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2952310	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs4968906	0.82[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58171668	0.82[EUR][1000 genomes]
rs7219279	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833524	chr17:66524030-66705194	Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66599400-66604200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr17:66602200-66605800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
3	chr17:66603200-66604600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
4	chr17:66604000-66604200	Flanking Active TSS	Liver	Liver
5	chr17:66604000-66606800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr17:66604000-66607200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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