Variant report

Variant	rs4971107
Chromosome Location	chr1:155875358-155875359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:155874110..155876772-chr1:155878394..155882215,3	MCF-7	breast:
2	chr1:155862010..155864371-chr1:155873312..155876072,2	MCF-7	breast:
3	chr1:155874080..155876407-chr1:155902022..155904119,2	MCF-7	breast:
4	chr1:155874036..155877922-chr1:155878278..155881350,6	K562	blood:
5	chr1:155862019..155864389-chr1:155873989..155875909,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143622	Chromatin interaction
ENSG00000201614	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12096547	1.00[CHB][hapmap]
rs621181	1.00[CHB][hapmap]
rs6663312	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
2	esv3423892	chr1:155664084-155901487	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155863400-155880200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:155865000-155875400	Strong transcription	Fetal Brain Female	brain
3	chr1:155865200-155878600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:155865200-155879200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr1:155865200-155879600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:155865600-155879200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:155865600-155879600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:155865800-155878400	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr1:155865800-155878800	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr1:155865800-155879200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:155865800-155879400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:155865800-155879800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:155865800-155880000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr1:155866000-155879000	Strong transcription	Liver	Liver
15	chr1:155866000-155879200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr1:155866000-155879200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr1:155866000-155879200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr1:155866000-155879600	Strong transcription	Primary B cells from peripheral blood	blood
19	chr1:155866000-155879600	Strong transcription	Duodenum Mucosa	Duodenum
20	chr1:155866000-155879600	Strong transcription	Fetal Intestine Large	intestine
21	chr1:155866000-155879800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr1:155866000-155879800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr1:155866000-155879800	Strong transcription	Fetal Thymus	thymus
24	chr1:155866200-155875400	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr1:155866200-155879000	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr1:155866200-155879000	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr1:155866200-155879800	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr1:155866400-155875400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr1:155866400-155877600	Strong transcription	Skeletal Muscle Male	skeletal muscle
30	chr1:155866400-155878000	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr1:155866400-155879200	Strong transcription	Skeletal Muscle Female	skeletal muscle
32	chr1:155866400-155879600	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr1:155866400-155879800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr1:155866600-155875400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr1:155866600-155878400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr1:155866800-155879000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr1:155867400-155878600	Strong transcription	Dnd41	blood
38	chr1:155867400-155879800	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr1:155867400-155879800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr1:155867400-155880000	Strong transcription	H1 Cell Line	embryonic stem cell
41	chr1:155868400-155877600	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr1:155868400-155879400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr1:155868600-155875400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr1:155868600-155879200	Strong transcription	Adipose Nuclei	Adipose
45	chr1:155868600-155879400	Strong transcription	Stomach Smooth Muscle	stomach
46	chr1:155868800-155876800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr1:155868800-155877400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr1:155868800-155878800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr1:155868800-155879400	Strong transcription	Left Ventricle	heart
50	chr1:155868800-155879800	Strong transcription	Thymus	Thymus

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