Variant report

Variant	rs4972963
Chromosome Location	chr2:231474711-231474712
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10171141	0.84[ASN][1000 genomes]
rs10177471	0.83[AMR][1000 genomes]
rs10183030	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10190300	0.83[AMR][1000 genomes]
rs28802613	0.82[AMR][1000 genomes]
rs4343455	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4972964	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4972965	0.85[ASN][1000 genomes]
rs4973336	0.88[ASN][1000 genomes]
rs4973338	0.81[EUR][1000 genomes]
rs6436952	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6436953	0.81[EUR][1000 genomes]
rs6436954	0.82[ASN][1000 genomes]
rs6714476	0.85[ASN][1000 genomes]
rs6748337	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73108726	0.87[ASN][1000 genomes]
rs7575688	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875955	chr2:231440555-231500805	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231468800-231475000	Weak transcription	Primary B cells from cord blood	blood
2	chr2:231469600-231474800	Weak transcription	GM12878-XiMat	blood
3	chr2:231469600-231475000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr2:231469600-231475000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr2:231469600-231475200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr2:231470200-231475800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr2:231472800-231497200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:231474600-231474800	Weak transcription	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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