Variant report

Variant	rs4973598
Chromosome Location	chr2:233922657-233922658
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:233912317..233915187-chr2:233920888..233923160,2	K562	blood:
2	chr2:233922323..233923950-chr2:233931960..233934343,2	K562	blood:
3	chr2:233922580..233924412-chr2:233924753..233926303,2	K562	blood:

Variant related genes	Relation type
ENSG00000168918	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7558755	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876009	chr2:233799400-233996429	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv876012	chr2:233899377-233996429	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:233914400-233926600	Weak transcription	HSMMtube	muscle
2	chr2:233916600-233924000	Weak transcription	Esophagus	oesophagus
3	chr2:233916600-233924000	Weak transcription	Right Atrium	heart
4	chr2:233916600-233924600	Weak transcription	Pancreas	Pancrea
5	chr2:233917000-233925800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:233917400-233926000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr2:233919000-233923600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr2:233919000-233923800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr2:233919000-233923800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr2:233919000-233924000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr2:233919000-233924200	Weak transcription	Liver	Liver
12	chr2:233919000-233925200	Weak transcription	Brain Angular Gyrus	brain
13	chr2:233919000-233925200	Weak transcription	Colon Smooth Muscle	Colon
14	chr2:233919200-233923000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr2:233919200-233923000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr2:233919200-233923200	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr2:233919200-233923400	Weak transcription	Spleen	Spleen
18	chr2:233919200-233923600	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr2:233919200-233923800	Weak transcription	Primary B cells from cord blood	blood
20	chr2:233919200-233923800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr2:233919200-233923800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr2:233919200-233925200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr2:233919400-233923400	Weak transcription	Primary B cells from peripheral blood	blood
24	chr2:233919400-233923600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr2:233919400-233923800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr2:233919400-233923800	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr2:233919400-233923800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr2:233919400-233923800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr2:233919400-233923800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr2:233919400-233924000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr2:233919400-233924000	Weak transcription	Brain Hippocampus Middle	brain
32	chr2:233919600-233923800	Weak transcription	Adipose Nuclei	Adipose
33	chr2:233919800-233924200	Weak transcription	Thymus	Thymus
34	chr2:233920000-233923800	Weak transcription	Right Ventricle	heart
35	chr2:233920000-233924000	Weak transcription	Lung	lung
36	chr2:233921600-233924400	Weak transcription	Small Intestine	intestine
37	chr2:233922400-233923400	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr2:233922400-233924000	Weak transcription	Fetal Muscle Trunk	muscle
39	chr2:233922400-233924000	Weak transcription	Fetal Muscle Leg	muscle
40	chr2:233922400-233924200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr2:233922400-233924400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr2:233922400-233926200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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