Variant report

Variant	rs4975303
Chromosome Location	chr4:130049157-130049158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1030830	0.90[CHB][hapmap];0.82[GIH][hapmap];0.89[JPT][hapmap]
rs10494317	0.85[GIH][hapmap];0.90[JPT][hapmap]
rs12500341	0.82[CHB][hapmap];0.84[GIH][hapmap];0.85[JPT][hapmap]
rs12500557	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12503465	0.81[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap]
rs12504200	0.81[CEU][hapmap];0.86[CHB][hapmap];0.87[GIH][hapmap];0.85[JPT][hapmap]
rs12505207	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12512345	0.82[CHB][hapmap]
rs12512846	1.00[ASN][1000 genomes]
rs17185550	1.00[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17185620	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17416188	0.82[CHB][hapmap]
rs17416706	0.81[CEU][hapmap];0.86[CHB][hapmap];0.87[GIH][hapmap];0.85[JPT][hapmap]
rs1756011	0.94[YRI][hapmap]
rs1877836	0.96[CEU][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs189236	0.90[YRI][hapmap]
rs1900397	0.81[CEU][hapmap];0.82[CHB][hapmap];0.84[GIH][hapmap]
rs2044523	0.81[CEU][hapmap];0.86[CHB][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap]
rs35162842	0.98[ASN][1000 genomes]
rs4533782	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4635829	0.98[ASN][1000 genomes]
rs4975191	0.81[CEU][hapmap];0.82[CHB][hapmap];0.84[GIH][hapmap]
rs4975294	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs4975302	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4975304	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4975305	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs530686	0.85[AFR][1000 genomes]
rs6838427	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6847784	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs72685402	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72687104	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs921375	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs921377	0.82[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv879931	chr4:129939775-130178102	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130032400-130052200	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links