Variant report

Variant	rs4977737
Chromosome Location	chr9:21871050-21871051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10117550	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10118406	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1134871	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11531716	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1418072	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2027484	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3928893	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4593639	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4607704	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4607709	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4977738	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4977739	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6475592	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7028211	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv892745	chr9:21857244-22006273	Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21847600-21871600	Strong transcription	Dnd41	blood
2	chr9:21855400-21873000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:21855600-21879800	Weak transcription	Small Intestine	intestine
4	chr9:21856600-21871200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:21857000-21871200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:21857400-21883800	Weak transcription	Pancreas	Pancrea
7	chr9:21859000-21892000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr9:21860200-21879800	Weak transcription	Right Ventricle	heart
9	chr9:21862200-21886800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr9:21862400-21874200	Weak transcription	Fetal Heart	heart
11	chr9:21863200-21880800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr9:21864200-21872000	Weak transcription	Stomach Mucosa	stomach
13	chr9:21864400-21872600	Weak transcription	Fetal Intestine Small	intestine
14	chr9:21864800-21875000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:21864800-21879400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr9:21865000-21872200	Weak transcription	Esophagus	oesophagus
17	chr9:21865000-21873400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:21865000-21880800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr9:21865000-21890200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr9:21865200-21871200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:21865200-21875000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:21865400-21892600	Weak transcription	Colonic Mucosa	Colon
23	chr9:21865600-21879800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr9:21865600-21890000	Weak transcription	Placenta	Placenta
25	chr9:21865800-21871400	Weak transcription	Brain Anterior Caudate	brain
26	chr9:21865800-21872000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr9:21865800-21872400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr9:21865800-21872800	Weak transcription	Fetal Intestine Large	intestine
29	chr9:21865800-21873800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr9:21865800-21874400	Weak transcription	Brain Hippocampus Middle	brain
31	chr9:21865800-21875000	Weak transcription	Fetal Stomach	stomach
32	chr9:21865800-21876600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr9:21865800-21879400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr9:21865800-21879400	Weak transcription	Liver	Liver
35	chr9:21865800-21879400	Weak transcription	GM12878-XiMat	blood
36	chr9:21865800-21879600	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr9:21865800-21879800	Weak transcription	Fetal Muscle Trunk	muscle
38	chr9:21865800-21880200	Weak transcription	Gastric	stomach
39	chr9:21865800-21882200	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr9:21865800-21883200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr9:21865800-21886800	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr9:21865800-21889600	Weak transcription	Ovary	ovary
43	chr9:21866000-21875600	Weak transcription	Fetal Lung	lung
44	chr9:21866000-21883800	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr9:21866000-21886000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr9:21866000-21890200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr9:21866200-21872800	Weak transcription	Osteobl	bone
48	chr9:21866200-21874000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr9:21866800-21883400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr9:21868000-21873200	Weak transcription	Fetal Kidney	kidney

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