Variant report

Variant	rs4979459
Chromosome Location	chr9:117481666-117481667
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10817669	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831694	chr9:117328640-117502785	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893766	chr9:117385992-117516418	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1042718	chr9:117435306-117488969	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117477800-117483000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr9:117479000-117484200	Enhancers	Primary T cells fromperipheralblood	blood
3	chr9:117479600-117482800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr9:117479800-117482600	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr9:117479800-117482600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr9:117480000-117482400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr9:117480200-117481800	Enhancers	Placenta Amnion	Placenta Amnion
8	chr9:117480200-117485000	Enhancers	HMEC	breast
9	chr9:117480400-117482000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr9:117480400-117482400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr9:117480400-117483600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:117480400-117484400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:117480400-117485000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:117480600-117484800	Enhancers	NHEK	skin
15	chr9:117480800-117481800	Bivalent Enhancer	HepG2	liver
16	chr9:117480800-117482000	Bivalent Enhancer	GM12878-XiMat	blood
17	chr9:117481000-117481800	Enhancers	Primary T cells from cord blood	blood
18	chr9:117481000-117482000	Bivalent Enhancer	Dnd41	blood
19	chr9:117481000-117484400	Enhancers	Esophagus	oesophagus
20	chr9:117481200-117484200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr9:117481200-117486000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr9:117481400-117481800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
23	chr9:117481400-117481800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr9:117481400-117481800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
25	chr9:117481400-117481800	Flanking Active TSS	Hela-S3	cervix
26	chr9:117481400-117482200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr9:117481400-117488800	Enhancers	NHDF-Ad	bronchial
28	chr9:117481600-117481800	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
29	chr9:117481600-117482000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
30	chr9:117481600-117482400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr9:117481600-117485600	Weak transcription	NH-A	brain

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