Variant report

Variant	rs4981935
Chromosome Location	chr14:32421047-32421048
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32418462..32421329-chr14:32545887..32548430,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258655	Chromatin interaction
ENSG00000100852	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1278947	1.00[JPT][hapmap]
rs17098355	0.82[AFR][1000 genomes]
rs72679241	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679244	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv526200	chr14:32308511-32454372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32418400-32422000	Enhancers	Placenta	Placenta
2	chr14:32418800-32421200	Enhancers	Fetal Intestine Large	intestine
3	chr14:32418800-32421400	Enhancers	Stomach Mucosa	stomach
4	chr14:32418800-32422000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr14:32418800-32422000	Enhancers	Fetal Stomach	stomach
6	chr14:32418800-32422400	Enhancers	K562	blood
7	chr14:32418800-32423600	Enhancers	Fetal Lung	lung
8	chr14:32419000-32421200	Enhancers	Fetal Brain Male	brain
9	chr14:32419000-32421400	Enhancers	Fetal Heart	heart
10	chr14:32419400-32421200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr14:32419400-32421200	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr14:32419400-32429000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr14:32419600-32421200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:32419600-32421600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr14:32419600-32421600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr14:32419600-32421600	Enhancers	Esophagus	oesophagus
17	chr14:32419600-32421600	Enhancers	Fetal Muscle Trunk	muscle
18	chr14:32419800-32421200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr14:32419800-32421200	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr14:32419800-32421600	Enhancers	Lung	lung
21	chr14:32420000-32421200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr14:32420000-32422000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
23	chr14:32420000-32422400	Weak transcription	Fetal Kidney	kidney
24	chr14:32420200-32421200	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr14:32420200-32434200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr14:32420400-32424000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr14:32420600-32421200	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr14:32420600-32422600	Enhancers	A549	lung
29	chr14:32420600-32424200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr14:32420600-32424400	Weak transcription	HMEC	breast
31	chr14:32420800-32421200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr14:32420800-32423000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr14:32420800-32424200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr14:32420800-32424800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr14:32421000-32424200	Weak transcription	Rectal Smooth Muscle	rectum
36	chr14:32421000-32424200	Weak transcription	HSMMtube	muscle
37	chr14:32421000-32425200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr14:32421000-32426200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr14:32421000-32426200	Weak transcription	Spleen	Spleen
40	chr14:32421000-32427400	Weak transcription	Gastric	stomach
41	chr14:32421000-32434200	Weak transcription	Fetal Intestine Small	intestine

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