Variant report

Variant	rs498290
Chromosome Location	chr6:113879572-113879573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113752149..113753980-chr6:113879220..113882165,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232316	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2493890	1.00[YRI][hapmap];0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113867400-113880600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:113876600-113885600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:113877600-113885600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:113878800-113885600	Weak transcription	Fetal Intestine Small	intestine
5	chr6:113879000-113880000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:113879000-113880200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:113879000-113881200	Enhancers	Fetal Brain Male	brain
8	chr6:113879200-113879800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:113879200-113880000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:113879200-113880600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:113879200-113883000	Enhancers	NH-A	brain
12	chr6:113879200-113883400	Enhancers	NHDF-Ad	bronchial
13	chr6:113879400-113879600	Enhancers	Stomach Smooth Muscle	stomach
14	chr6:113879400-113879800	Enhancers	Pancreas	Pancrea
15	chr6:113879400-113879800	Enhancers	Spleen	Spleen
16	chr6:113879400-113880200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:113879400-113880400	Enhancers	Ovary	ovary
18	chr6:113879400-113880400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr6:113879400-113881000	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr6:113879400-113881000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr6:113879400-113881000	Enhancers	Fetal Stomach	stomach
22	chr6:113879400-113882000	Enhancers	HSMM	muscle
23	chr6:113879400-113883000	Enhancers	HSMMtube	muscle
24	chr6:113879400-113883000	Enhancers	Osteobl	bone
25	chr6:113879400-113883200	Enhancers	NHEK	skin
26	chr6:113879400-113883400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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