Variant report

Variant	rs4982977
Chromosome Location	chr14:25129146-25129147
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10138102	0.82[ASN][1000 genomes]
rs10149297	0.82[ASN][1000 genomes]
rs17257145	0.87[ASN][1000 genomes]
rs1957519	0.87[ASN][1000 genomes]
rs4981546	0.85[ASN][1000 genomes]
rs724023	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv510631	chr14:25045183-25172311	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25128800-25129800	Enhancers	Primary T cells fromperipheralblood	blood
2	chr14:25128800-25131800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr14:25128800-25132000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:25129000-25129200	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr14:25129000-25130000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr14:25129000-25130200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr14:25129000-25131000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:25129000-25134800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr14:25129000-25135200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr14:25129000-25135400	Enhancers	Primary hematopoietic stem cells	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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