Variant report

Variant	rs4987362
Chromosome Location	chr1:169664348-169664349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169570098..169571225-chr1:169663167..169664353,5	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs3917422	1.00[YRI][hapmap]
rs4987378	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv872539	chr1:169658586-169674590	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1009313	chr1:169661299-169680173	Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169653200-169671600	Weak transcription	Spleen	Spleen
2	chr1:169658400-169666200	Enhancers	Thymus	Thymus
3	chr1:169660800-169665200	Genic enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:169661200-169665400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:169662000-169665800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:169662000-169667400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr1:169662400-169676000	Genic enhancers	Primary B cells from peripheral blood	blood
8	chr1:169662800-169664800	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:169663200-169664400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr1:169663200-169664400	Enhancers	Brain Hippocampus Middle	brain
11	chr1:169663200-169664800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr1:169663200-169669000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr1:169663200-169674000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr1:169663600-169665600	Enhancers	GM12878-XiMat	blood
15	chr1:169663800-169664400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
16	chr1:169663800-169665800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
17	chr1:169664000-169664400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
18	chr1:169664000-169664400	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr1:169664000-169664600	Enhancers	Primary hematopoietic stem cells	blood
20	chr1:169664000-169664600	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
21	chr1:169664000-169665200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr1:169664000-169665200	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr1:169664000-169665400	Genic enhancers	Primary B cells from cord blood	blood
24	chr1:169664000-169666200	Transcr. at gene 5' and 3'	Primary T cells from cord blood	blood
25	chr1:169664000-169666200	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
26	chr1:169664000-169673400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr1:169664000-169674000	Genic enhancers	Fetal Thymus	thymus
28	chr1:169664000-169674200	Genic enhancers	Primary T cells fromperipheralblood	blood
29	chr1:169664200-169664800	Genic enhancers	Primary neutrophils fromperipheralblood	blood
30	chr1:169664200-169664800	Transcr. at gene 5' and 3'	Dnd41	blood
31	chr1:169664200-169665200	Genic enhancers	Monocytes-CD14+_RO01746	blood
32	chr1:169664200-169670400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood

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