Variant report

Variant	rs4987392
Chromosome Location	chr1:169657953-169657954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4987371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59716542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169647800-169659600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr1:169647800-169660000	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr1:169648200-169659000	Enhancers	Primary B cells from peripheral blood	blood
4	chr1:169650600-169658400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr1:169652800-169660200	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr1:169653200-169671600	Weak transcription	Spleen	Spleen
7	chr1:169655000-169658600	Enhancers	Primary T cells from cord blood	blood
8	chr1:169656200-169659400	Enhancers	Primary B cells from cord blood	blood
9	chr1:169656200-169659400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr1:169656600-169658200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:169656600-169659600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr1:169656800-169659200	Enhancers	Primary T cells fromperipheralblood	blood
13	chr1:169656800-169662600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr1:169657000-169658000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr1:169657000-169659400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr1:169657000-169660200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr1:169657000-169661800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr1:169657200-169659200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr1:169657600-169658800	Enhancers	Primary hematopoietic stem cells	blood
20	chr1:169657600-169659200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr1:169657600-169659400	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr1:169657800-169659600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr1:169657800-169659800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr1:169657800-169660200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr1:169657800-169660600	Enhancers	Fetal Thymus	thymus

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