Variant report

Variant	rs4987891
Chromosome Location	chr11:108096701-108096702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:108095957-108096702	GM12892	blood:	n/a	n/a
2	NFATC1	chr11:108095516-108096701	GM12878	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:107878756..107880670-chr11:108096496..108098082,2	MCF-7	breast:
2	chr11:108095113..108096885-chr11:108527340..108529884,2	K562	blood:
3	chr11:108089780..108091711-chr11:108095775..108097725,2	MCF-7	breast:
4	chr11:107878690..107880748-chr11:108096542..108098522,2	K562	blood:
5	chr11:108070782..108073415-chr11:108095744..108098057,2	MCF-7	breast:
6	chr11:108092760..108095657-chr11:108096566..108100675,5	MCF-7	breast:

No data

Variant related genes	Relation type
NPAT	TF binding region
ENSG00000149308	Chromatin interaction
ENSG00000166266	Chromatin interaction
ENSG00000149311	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs3218707	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987907	1.00[ASW][hapmap]
rs4987946	1.00[ASW][hapmap]
rs7925162	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108091000-108097400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:108091800-108097000	Active TSS	Primary T helper naive cells from peripheral blood	blood
3	chr11:108091800-108097000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
4	chr11:108091800-108098200	Active TSS	Primary T killer memory cells from peripheral blood	blood
5	chr11:108092200-108097800	Active TSS	Thymus	Thymus
6	chr11:108092400-108096800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr11:108094000-108098200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
8	chr11:108094200-108097600	Flanking Active TSS	Primary B cells from cord blood	blood
9	chr11:108094200-108099000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
10	chr11:108094600-108121600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr11:108094800-108097200	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr11:108094800-108100400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:108094800-108100400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:108094800-108116000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:108094800-108147400	Weak transcription	Esophagus	oesophagus
16	chr11:108094800-108244400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:108095000-108100400	Weak transcription	Ovary	ovary
18	chr11:108095000-108121400	Weak transcription	Colonic Mucosa	Colon
19	chr11:108095200-108097000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:108095200-108099000	Weak transcription	Fetal Intestine Large	intestine
21	chr11:108095200-108099000	Weak transcription	Placenta	Placenta
22	chr11:108095200-108100400	Weak transcription	Gastric	stomach
23	chr11:108095200-108106800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr11:108095400-108097000	Weak transcription	HSMM	muscle
25	chr11:108095400-108097200	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr11:108095400-108099000	Weak transcription	Adipose Nuclei	Adipose
27	chr11:108095400-108099000	Weak transcription	Fetal Muscle Leg	muscle
28	chr11:108095400-108099400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr11:108095400-108099800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr11:108095400-108100400	Weak transcription	Fetal Stomach	stomach
31	chr11:108095400-108103800	Weak transcription	Right Ventricle	heart
32	chr11:108095400-108119800	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr11:108095600-108097000	Active TSS	Primary T cells from cord blood	blood
34	chr11:108095600-108097000	Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr11:108095600-108097800	Enhancers	HepG2	liver
36	chr11:108095600-108098400	Weak transcription	Fetal Lung	lung
37	chr11:108095600-108099000	Weak transcription	HSMMtube	muscle
38	chr11:108095600-108099200	Weak transcription	Stomach Smooth Muscle	stomach
39	chr11:108095600-108100600	Weak transcription	Aorta	Aorta
40	chr11:108095800-108097000	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr11:108095800-108098200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr11:108095800-108099000	Weak transcription	NH-A	brain
43	chr11:108095800-108099400	Weak transcription	Colon Smooth Muscle	Colon
44	chr11:108095800-108100200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:108095800-108102400	Weak transcription	Fetal Kidney	kidney
46	chr11:108095800-108119800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr11:108095800-108122400	Weak transcription	Brain Angular Gyrus	brain
48	chr11:108096000-108097600	Weak transcription	HUVEC	blood vessel
49	chr11:108096000-108098400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr11:108096000-108099200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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