Variant report

Variant	rs4987991
Chromosome Location	chr11:108154650-108154651
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2235004	1.00[AMR][1000 genomes]
rs3218693	0.87[YRI][hapmap]
rs4987875	1.00[AMR][1000 genomes]
rs4987975	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988130	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110911	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv556430	chr11:108097333-108175462	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv898384	chr11:108097333-108251211	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv898385	chr11:108123189-108165736	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv832262	chr11:108123831-108309350	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108094800-108244400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:108096400-108156400	Weak transcription	NHLF	lung
3	chr11:108108400-108184800	Weak transcription	NHEK	skin
4	chr11:108126200-108157600	Weak transcription	HMEC	breast
5	chr11:108129000-108155400	Weak transcription	HSMMtube	muscle
6	chr11:108131800-108209600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:108137800-108159400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:108137800-108160400	Strong transcription	Primary B cells from peripheral blood	blood
9	chr11:108137800-108212000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:108138400-108209400	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr11:108139200-108163400	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr11:108139200-108208200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr11:108141200-108181800	Weak transcription	Small Intestine	intestine
14	chr11:108141800-108163600	Strong transcription	Adipose Nuclei	Adipose
15	chr11:108142600-108155400	Weak transcription	Brain Germinal Matrix	brain
16	chr11:108143000-108175800	Weak transcription	Right Ventricle	heart
17	chr11:108143000-108186600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr11:108143800-108160400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr11:108143800-108175400	Weak transcription	Fetal Brain Male	brain
20	chr11:108144000-108160000	Weak transcription	NHDF-Ad	bronchial
21	chr11:108144000-108168200	Weak transcription	Hela-S3	cervix
22	chr11:108144400-108165400	Weak transcription	Brain Substantia Nigra	brain
23	chr11:108144400-108200800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr11:108145800-108174400	Weak transcription	A549	lung
25	chr11:108145800-108235400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr11:108147200-108210800	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr11:108147400-108161200	Strong transcription	Dnd41	blood
28	chr11:108148200-108155600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:108148200-108159000	Strong transcription	Primary B cells from cord blood	blood
30	chr11:108148200-108160600	Weak transcription	Fetal Brain Female	brain
31	chr11:108148200-108162800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr11:108148200-108225600	Weak transcription	Esophagus	oesophagus
33	chr11:108148400-108161000	Weak transcription	Spleen	Spleen
34	chr11:108148600-108158400	Weak transcription	Brain Hippocampus Middle	brain
35	chr11:108148600-108160600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr11:108148600-108160600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:108148600-108166200	Weak transcription	Lung	lung
38	chr11:108148600-108202600	Weak transcription	Psoas Muscle	Psoas
39	chr11:108148600-108208800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr11:108148600-108225600	Weak transcription	Gastric	stomach
41	chr11:108148800-108155400	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr11:108149000-108160400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr11:108149200-108208600	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr11:108149400-108159000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr11:108149400-108211200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr11:108149600-108155000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr11:108149600-108155200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr11:108149600-108155800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:108149600-108159400	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr11:108149600-108160400	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links