Variant report

Variant	rs498822
Chromosome Location	chr18:12495616-12495617
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:12493953..12496001-chr18:12499792..12502495,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11659280	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1785333	0.84[ASN][1000 genomes]
rs1785363	0.90[ASN][1000 genomes]
rs554389	0.84[ASN][1000 genomes]
rs558128	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs578667	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063125	chr18:12046892-12918251	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	130 gene(s)	inside rSNPs	diseases
2	nsv491873	chr18:12159445-12739784	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
3	nsv909400	chr18:12201374-12585545	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	esv2758471	chr18:12240681-12499525	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	esv2758714	chr18:12240681-12499525	Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
6	nsv1060808	chr18:12302792-12514417	Genic enhancers Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	esv3528039	chr18:12396582-12851293	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
8	esv3528041	chr18:12396641-12851245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
9	nsv2208	chr18:12472999-12518189	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv523743	chr18:12474505-12742809	Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	esv2756075	chr18:12481377-12548970	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:12460200-12516600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr18:12465600-12500800	Weak transcription	Fetal Intestine Large	intestine
3	chr18:12478400-12512600	Weak transcription	Fetal Intestine Small	intestine
4	chr18:12478600-12496000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr18:12478600-12498400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr18:12478600-12506400	Weak transcription	Right Ventricle	heart
7	chr18:12478600-12510800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr18:12478800-12497400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr18:12478800-12499600	Weak transcription	NHLF	lung
10	chr18:12478800-12504800	Weak transcription	Gastric	stomach
11	chr18:12478800-12505800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr18:12478800-12514200	Weak transcription	NH-A	brain
13	chr18:12478800-12515800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr18:12478800-12515800	Weak transcription	Placenta	Placenta
15	chr18:12478800-12551800	Weak transcription	Pancreas	Pancrea
16	chr18:12480800-12497200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr18:12480800-12511000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr18:12481000-12499200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr18:12484000-12496200	Strong transcription	HSMM	muscle
20	chr18:12486200-12504600	Weak transcription	HMEC	breast
21	chr18:12488000-12496000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr18:12488400-12496200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr18:12490200-12503400	Weak transcription	Brain Angular Gyrus	brain
24	chr18:12490400-12496000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr18:12490400-12502800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr18:12491000-12496400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr18:12491200-12495800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr18:12491200-12495800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr18:12491400-12496000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr18:12491400-12496000	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr18:12491400-12496200	Strong transcription	Fetal Brain Female	brain
32	chr18:12491400-12496200	Strong transcription	Osteobl	bone
33	chr18:12491600-12495800	Strong transcription	Fetal Muscle Trunk	muscle
34	chr18:12491600-12510800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr18:12491800-12497000	Weak transcription	Small Intestine	intestine
36	chr18:12491800-12502200	Weak transcription	Spleen	Spleen
37	chr18:12492000-12496200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr18:12492000-12504800	Weak transcription	Aorta	Aorta
39	chr18:12492200-12497400	Weak transcription	Lung	lung
40	chr18:12492200-12501600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr18:12492200-12530400	Weak transcription	HepG2	liver
42	chr18:12492200-12532800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr18:12492200-12548600	Weak transcription	Fetal Kidney	kidney
44	chr18:12492400-12496200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr18:12492400-12496200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr18:12492400-12504800	Weak transcription	Brain Hippocampus Middle	brain
47	chr18:12492400-12515600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr18:12492600-12504800	Weak transcription	Fetal Heart	heart
49	chr18:12492800-12510800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr18:12493000-12541200	Weak transcription	NHEK	skin

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