Variant report

Variant	rs4990482
Chromosome Location	chr6:75439067-75439068
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs2485452	0.93[EUR][1000 genomes]
rs2485456	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2485457	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2485458	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2485459	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2485460	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2502454	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2502455	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2502457	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2502458	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2502460	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2502461	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2502462	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2502463	0.92[EUR][1000 genomes]
rs4235890	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4259223	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4260730	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4283850	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4293970	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4308525	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4312939	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4314468	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4321797	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4368781	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4507552	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4513745	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4516911	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4523053	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4576212	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4708161	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs62438801	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs62438802	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs62438803	0.90[EUR][1000 genomes]
rs62438804	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs62438805	0.80[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6453770	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6453771	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6453772	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6453773	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6453774	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6453775	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6453776	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6930821	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7749977	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7754019	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7769692	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7776394	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9360842	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9360843	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9360844	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9360845	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9443057	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv830695	chr6:75409656-75583115	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv603759	chr6:75432861-75461657	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv886169	chr6:75432861-75610722	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75437800-75440400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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