Variant report

Variant	rs4993915
Chromosome Location	chr21:28019065-28019066
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GABPA-17	chr21:28018989-28019071	NONHSAT081548

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13046890	0.86[ASN][1000 genomes]
rs1701371	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1788297	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1788298	0.82[ASN][1000 genomes]
rs1788300	0.92[ASN][1000 genomes]
rs2156288	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs226273	0.81[EUR][1000 genomes]
rs226275	0.81[EUR][1000 genomes]
rs226276	0.81[EUR][1000 genomes]
rs226277	0.81[EUR][1000 genomes]
rs226278	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs226279	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs226311	0.81[EUR][1000 genomes]
rs366384	0.89[ASN][1000 genomes]
rs373511	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs375997	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs381140	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs383081	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs383332	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs447493	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs455908	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs458512	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs459144	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs460100	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs461137	0.92[ASN][1000 genomes]
rs463051	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs465446	0.92[ASN][1000 genomes]
rs466257	0.92[ASN][1000 genomes]
rs466429	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs466815	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7283610	0.92[ASN][1000 genomes]
rs9979657	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056506	chr21:27332898-28049880	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv544412	chr21:27332898-28049880	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv544413	chr21:27942060-28065995	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv913661	chr21:27979924-28025461	Weak transcription Enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2760690	chr21:28016198-28026512	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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