Variant report

Variant	rs499574
Chromosome Location	chr1:91895397-91895398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10493850	0.82[CEU][hapmap]
rs10493851	0.82[CEU][hapmap]
rs10874496	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10874782	0.82[CEU][hapmap]
rs1508588	0.82[CEU][hapmap]
rs2219394	0.82[CEU][hapmap]
rs506848	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs516462	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs534984	0.95[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs543234	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs556803	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs556952	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs579546	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs579603	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs745732	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links