Variant report

Variant	rs500199
Chromosome Location	chr6:160701403-160701404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr6:160700898-160701441	U2OS	brain:	n/a	n/a

Variant related genes	Relation type
SLC22A2	TF binding region

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs172722	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs221968	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2774226	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2988707	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs316161	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs316162	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs316163	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs316166	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs316167	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs316168	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs316169	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs316170	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs366719	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs368123	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs368134	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs368235	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs370278	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs370301	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs370413	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs370586	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs373294	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs376440	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs377197	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs378629	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs380143	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs384071	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs384156	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs386581	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs393173	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs393271	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs393324	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs394463	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs399367	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs401237	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs401882	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs402051	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs402387	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs405137	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs406151	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs409610	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs410118	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs410569	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs412128	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs414130	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs415148	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs415897	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs415934	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs417770	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs422292	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs422973	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs429671	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs432655	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs434012	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs435294	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs435542	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs436348	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs437539	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs438765	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs439039	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs440429	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs442426	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs444989	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs446809	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs446887	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs449349	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs452788	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs471490	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs474617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs505111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs510615	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs536290	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs560535	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs577261	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs581031	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs601690	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs606329	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs620121	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs622624	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs649587	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs667538	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs678145	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs685289	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73604547	0.82[AMR][1000 genomes]
rs7450667	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv35098	chr6:160422589-161070870	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv2757197	chr6:160432331-161070870	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv818463	chr6:160435569-161025547	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv1030746	chr6:160592321-160867031	Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv538493	chr6:160592321-160867031	Weak transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1030171	chr6:160648469-161091864	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv886809	chr6:160670494-160979275	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
10	nsv970320	chr6:160696706-160707570	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv7984	chr6:160698601-160713950	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
12	nsv520571	chr6:160700769-160704943	Flanking Active TSS Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
13	nsv525016	chr6:160700769-160705154	Flanking Active TSS Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
14	nsv886810	chr6:160700769-160897872	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
15	nsv886811	chr6:160700769-161070990	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links