Variant report

Variant	rs5003738
Chromosome Location	chr9:95637928-95637929
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95570373..95571952-chr9:95637590..95640500,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187984	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4076629	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7030886	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv893574	chr9:95580376-95688099	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95609000-95639800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:95616200-95639800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:95616400-95639800	Weak transcription	Small Intestine	intestine
4	chr9:95616600-95639600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr9:95618200-95639800	Weak transcription	Colonic Mucosa	Colon
6	chr9:95618400-95638600	Weak transcription	K562	blood
7	chr9:95618600-95638000	Weak transcription	Brain Anterior Caudate	brain
8	chr9:95619600-95638600	Weak transcription	Brain Angular Gyrus	brain
9	chr9:95622400-95638000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:95622400-95638000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr9:95622400-95638600	Weak transcription	HMEC	breast
12	chr9:95622400-95638600	Weak transcription	NHDF-Ad	bronchial
13	chr9:95622400-95638800	Weak transcription	NHLF	lung
14	chr9:95622600-95638800	Weak transcription	Brain Substantia Nigra	brain
15	chr9:95622600-95639000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr9:95622600-95639000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr9:95622600-95639000	Weak transcription	NH-A	brain
18	chr9:95622600-95639400	Weak transcription	HSMMtube	muscle
19	chr9:95622600-95639600	Weak transcription	Fetal Kidney	kidney
20	chr9:95622600-95639800	Weak transcription	Aorta	Aorta
21	chr9:95623200-95639000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:95623200-95639400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr9:95623600-95639200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr9:95625600-95639600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr9:95628200-95639800	Weak transcription	Right Atrium	heart
26	chr9:95630600-95639400	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr9:95630600-95639600	Weak transcription	Liver	Liver
28	chr9:95630800-95638600	Weak transcription	HUVEC	blood vessel
29	chr9:95630800-95638600	Weak transcription	NHEK	skin
30	chr9:95631000-95638600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr9:95631000-95638600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr9:95631000-95638800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr9:95631000-95639400	Weak transcription	Brain Hippocampus Middle	brain
34	chr9:95631000-95639400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr9:95631000-95639600	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr9:95631200-95639600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr9:95631200-95639800	Weak transcription	Placenta	Placenta
38	chr9:95631400-95639800	Weak transcription	Fetal Muscle Trunk	muscle
39	chr9:95631800-95638800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr9:95631800-95639600	Weak transcription	Primary B cells from peripheral blood	blood
41	chr9:95632000-95638600	Weak transcription	Fetal Lung	lung
42	chr9:95632000-95638800	Weak transcription	Osteobl	bone
43	chr9:95633000-95638200	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr9:95633200-95639000	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr9:95633200-95639200	Weak transcription	Primary hematopoietic stem cells	blood
46	chr9:95633200-95639400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr9:95633200-95639400	Weak transcription	Fetal Intestine Large	intestine
48	chr9:95633200-95639400	Weak transcription	Fetal Stomach	stomach
49	chr9:95633200-95639400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr9:95633200-95639600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links