Variant report

Variant	rs5005642
Chromosome Location	chr11:6121821-6121822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10769656	0.85[AFR][1000 genomes]
rs10769657	0.85[AFR][1000 genomes]
rs10769658	0.85[AFR][1000 genomes]
rs10769659	0.85[AFR][1000 genomes]
rs10839476	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10839477	0.85[AFR][1000 genomes]
rs10839478	0.85[AFR][1000 genomes]
rs10839479	0.85[AFR][1000 genomes]
rs10839489	0.85[AFR][1000 genomes]
rs10839491	0.85[AFR][1000 genomes]
rs10839509	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10839510	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10839512	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10839513	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11040714	0.85[AFR][1000 genomes]
rs11040715	0.82[AFR][1000 genomes]
rs11040718	0.85[AFR][1000 genomes]
rs11040741	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11511999	0.81[AFR][1000 genomes]
rs12360715	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12803982	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12806233	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs12807547	0.83[AFR][1000 genomes]
rs1462982	0.85[AFR][1000 genomes]
rs1599689	0.85[AFR][1000 genomes]
rs1599690	0.85[AFR][1000 genomes]
rs34481020	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs34682998	0.89[AFR][1000 genomes]
rs34814525	0.87[AFR][1000 genomes]
rs35261017	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35368155	0.89[AFR][1000 genomes]
rs35515581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35682479	0.89[AFR][1000 genomes]
rs35755858	0.82[AMR][1000 genomes]
rs35829351	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4758384	0.88[AFR][1000 genomes]
rs4758385	0.85[AFR][1000 genomes]
rs4758386	0.85[AFR][1000 genomes]
rs5005636	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs5005637	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs5005638	0.81[EUR][1000 genomes]
rs5005639	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs5005640	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs5005643	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs5005644	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6578736	0.83[AFR][1000 genomes]
rs6578737	0.83[AFR][1000 genomes]
rs7104448	0.85[AFR][1000 genomes]
rs7106179	0.83[AFR][1000 genomes]
rs7111479	0.85[AFR][1000 genomes]
rs7114613	0.85[AFR][1000 genomes]
rs7114866	0.85[AFR][1000 genomes]
rs7117092	0.83[AFR][1000 genomes]
rs7117349	0.83[AFR][1000 genomes]
rs7122336	0.85[AFR][1000 genomes]
rs7122340	0.85[AFR][1000 genomes]
rs7123409	0.85[AFR][1000 genomes]
rs7929863	0.83[AFR][1000 genomes]
rs7929888	0.85[AFR][1000 genomes]
rs7932413	0.85[AFR][1000 genomes]
rs7935717	0.85[AFR][1000 genomes]
rs7935845	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7941058	0.85[AFR][1000 genomes]
rs7943059	0.82[AFR][1000 genomes]
rs7943285	0.83[AFR][1000 genomes]
rs7943304	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7946421	0.85[AFR][1000 genomes]
rs7952121	0.85[AFR][1000 genomes]
rs7952132	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553241	chr11:5506034-6203685	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv530216	chr11:5614439-6468232	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1036389	chr11:5695451-6177680	Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv540943	chr11:5695451-6177680	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
5	esv9953	chr11:6114243-6122520	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
6	nsv553366	chr11:6116776-6125660	Enhancers Bivalent Enhancer Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
7	esv12330	chr11:6121495-6121968	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:6120400-6122000	Enhancers	Primary T cells from cord blood	blood
2	chr11:6121000-6122000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:6121200-6122000	Enhancers	Monocytes-CD14+_RO01746	blood

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