Variant report

Variant	rs5005909
Chromosome Location	chr8:42528667-42528668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10958725	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10958727	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13254578	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13273442	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13277254	0.82[ASN][1000 genomes]
rs13277524	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13280301	0.82[ASN][1000 genomes]
rs13280604	0.87[CEU][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1451239	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1451240	0.81[CEU][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1530847	0.93[CEU][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs16891561	0.88[CEU][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes]
rs1901281	0.82[AMR][1000 genomes]
rs1955185	0.87[CEU][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1955186	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1979140	0.88[CEU][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34456987	0.96[ASN][1000 genomes]
rs35599391	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs36057318	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4236926	0.84[CEU][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs4295650	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4392883	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4736835	0.87[CEU][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4950	0.87[CEU][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4951	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs57645595	0.82[AMR][1000 genomes]
rs58379124	0.81[AMR][1000 genomes]
rs6474412	0.87[CEU][hapmap];0.89[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6474413	0.87[CEU][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6474414	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6474415	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6985052	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6987704	0.82[ASN][1000 genomes]
rs6990603	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6997909	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7004381	0.87[CEU][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7837296	1.00[CEU][hapmap];0.89[JPT][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7842601	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9643853	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9643891	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9693825	0.80[AMR][1000 genomes]
rs9792257	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9792277	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530880	chr8:41895241-42755506	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1034724	chr8:42386707-42772203	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:42522200-42533400	Weak transcription	Dnd41	blood

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