Variant report

Variant	rs5006852
Chromosome Location	chr10:45601284-45601285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10793584	0.80[EUR][1000 genomes]
rs12413346	0.80[EUR][1000 genomes]
rs2153333	0.82[EUR][1000 genomes]
rs3862873	0.81[EUR][1000 genomes]
rs3927771	0.83[EUR][1000 genomes]
rs4068923	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4068926	0.80[EUR][1000 genomes]
rs4379782	0.81[EUR][1000 genomes]
rs4453185	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4472887	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4500437	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4511242	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5006853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831848	chr10:45490176-45667670	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv947903	chr10:45598715-45657182	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45591000-45602000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:45599400-45601800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:45600000-45602200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:45600600-45602000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr10:45600600-45602200	Enhancers	Fetal Muscle Leg	muscle
6	chr10:45600800-45602200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr10:45601000-45601600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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