Variant report

Variant	rs5012306
Chromosome Location	chr3:105071369-105071370
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1020110	0.86[ASN][1000 genomes]
rs10433369	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs10446292	0.88[ASN][1000 genomes]
rs10511244	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs12491519	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.86[ASN][1000 genomes]
rs12495149	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs12630634	0.94[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.83[ASN][1000 genomes]
rs12633488	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12637538	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.86[ASN][1000 genomes]
rs1347792	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs1347793	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs1438540	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs16844719	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.86[ASN][1000 genomes]
rs16851091	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16851172	0.88[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap]
rs16851188	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs2007681	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.86[ASN][1000 genomes]
rs2007688	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs2164954	0.93[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs60073537	0.86[ASN][1000 genomes]
rs6437591	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs73177460	0.88[ASN][1000 genomes]
rs73177480	0.88[ASN][1000 genomes]
rs73181308	0.86[ASN][1000 genomes]
rs73183107	0.82[ASN][1000 genomes]
rs73183124	0.83[ASN][1000 genomes]
rs9637375	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs9637377	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv829650	chr3:105070893-105255036	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105068000-105072200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:105068000-105072400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:105068000-105072400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:105068600-105071400	Enhancers	NHDF-Ad	bronchial
5	chr3:105068600-105072400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:105068600-105072400	Enhancers	NHEK	skin
7	chr3:105068600-105074600	Enhancers	HMEC	breast
8	chr3:105069000-105072400	Weak transcription	HSMMtube	muscle
9	chr3:105069400-105071400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:105069800-105072200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:105069800-105072400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr3:105069800-105072400	Weak transcription	Psoas Muscle	Psoas
13	chr3:105070000-105071400	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr3:105070000-105072200	Enhancers	HUVEC	blood vessel
15	chr3:105070200-105071600	Weak transcription	NH-A	brain
16	chr3:105070200-105072400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:105070200-105072400	Weak transcription	Aorta	Aorta
18	chr3:105070400-105071400	Weak transcription	HSMM	muscle
19	chr3:105070400-105071800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:105070800-105072000	Weak transcription	Osteobl	bone
21	chr3:105071000-105072000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:105071000-105072200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr3:105071000-105072400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:105071000-105072400	Weak transcription	NHLF	lung
25	chr3:105071000-105078200	Weak transcription	A549	lung
26	chr3:105071200-105071600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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