Variant report

Variant	rs501403
Chromosome Location	chr8:101218079-101218080
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12514182	0.84[AFR][1000 genomes]
rs13190354	0.82[ASN][1000 genomes]
rs1388111	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17305186	0.84[AFR][1000 genomes]
rs2054970	0.84[AFR][1000 genomes]
rs2087619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2124949	0.87[ASN][1000 genomes]
rs4147737	0.89[ASN][1000 genomes]
rs4147738	0.89[ASN][1000 genomes]
rs4147743	0.89[ASN][1000 genomes]
rs56099109	0.89[ASN][1000 genomes]
rs56291043	0.83[ASN][1000 genomes]
rs72750150	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72751831	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72751862	0.84[AFR][1000 genomes]
rs72751865	0.84[AFR][1000 genomes]
rs72751870	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6329	chr8:101186685-101231388	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:101171000-101224800	Weak transcription	Pancreas	Pancrea
2	chr8:101171000-101224800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr8:101171600-101220400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:101171800-101224600	Weak transcription	A549	lung
5	chr8:101189200-101225000	Weak transcription	Gastric	stomach
6	chr8:101199400-101224600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr8:101199400-101224800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr8:101204800-101224800	Weak transcription	Liver	Liver
9	chr8:101205600-101224800	Weak transcription	Aorta	Aorta
10	chr8:101207800-101261600	Weak transcription	Fetal Brain Male	brain
11	chr8:101214400-101224800	Weak transcription	GM12878-XiMat	blood
12	chr8:101214800-101224800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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