Variant report

Variant	rs501778
Chromosome Location	chr1:165897070-165897071
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10800168	0.98[EUR][1000 genomes]
rs2993825	0.94[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2993829	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3014720	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs471326	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs472888	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500968	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs525577	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558711	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7514161	0.93[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7514325	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7516698	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872509	chr1:165885147-165917109	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165858600-165902400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:165880800-165902600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:165894400-165902400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:165894600-165902400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:165896400-165897200	Weak transcription	Fetal Thymus	thymus
6	chr1:165896800-165897200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr1:165896800-165897400	Enhancers	GM12878-XiMat	blood
8	chr1:165897000-165897800	Enhancers	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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