Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11207005	0.80[ASN][1000 genomes]
rs12135189	0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1991093	0.91[ASN][1000 genomes]
rs2432690	0.83[ASN][1000 genomes]
rs2656095	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2764664	0.88[ASN][1000 genomes]
rs2764666	0.88[ASN][1000 genomes]
rs485723	0.89[ASN][1000 genomes]
rs501921	0.91[ASN][1000 genomes]
rs508389	0.90[ASN][1000 genomes]
rs511707	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs545582	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs545671	0.84[ASN][1000 genomes]
rs561531	0.88[ASN][1000 genomes]
rs576038	0.84[ASN][1000 genomes]
rs581886	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs595513	0.91[ASN][1000 genomes]
rs610360	0.91[ASN][1000 genomes]
rs611606	0.92[ASN][1000 genomes]
rs622423	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs632935	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs634391	0.84[ASN][1000 genomes]
rs637379	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs642526	0.84[ASN][1000 genomes]
rs643382	0.89[ASN][1000 genomes]
rs648607	0.88[ASN][1000 genomes]
rs674966	0.88[ASN][1000 genomes]
rs680197	0.91[ASN][1000 genomes]
rs833626	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57770000-57775400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:57770400-57772600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:57770400-57772600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr1:57770400-57772800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:57770600-57772600	Genic enhancers	Fetal Intestine Large	intestine
6	chr1:57770800-57776000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:57771000-57773400	Weak transcription	HepG2	liver
8	chr1:57771000-57773800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr1:57771600-57772600	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr1:57771600-57774000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr1:57771800-57772600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr1:57771800-57773800	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr1:57771800-57773800	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr1:57771800-57774400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr1:57772000-57772600	Enhancers	Fetal Intestine Small	intestine
16	chr1:57772000-57773800	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr1:57772000-57774000	Enhancers	Primary T helper cells fromperipheralblood	blood

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