Variant report

Variant	rs5020374
Chromosome Location	chr7:21808772-21808773
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2893047	0.88[EUR][1000 genomes]
rs4722053	0.84[CEU][hapmap];0.80[CHB][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4722056	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6977017	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7779283	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs7796072	0.89[EUR][1000 genomes]
rs7796122	0.84[CEU][hapmap];0.88[EUR][1000 genomes]
rs7796296	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv470177	chr7:21801125-21817048	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21796600-21810000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr7:21805200-21810000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:21805400-21810200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr7:21805400-21810600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:21805600-21809600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr7:21805600-21813800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:21805600-21813800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:21805800-21810800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr7:21806200-21812400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:21807000-21810200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:21807200-21811600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:21807600-21810000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr7:21807800-21809400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr7:21807800-21810000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr7:21808000-21808800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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