Variant report

Variant	rs502376
Chromosome Location	chr1:67222507-67222508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11208936	1.00[ASW][hapmap];0.87[LWK][hapmap];0.87[YRI][hapmap]
rs1315998	0.84[AFR][1000 genomes]
rs17129170	1.00[ASW][hapmap];0.87[LWK][hapmap];0.87[YRI][hapmap]
rs2454325	0.82[CEU][hapmap]
rs475762	0.80[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs547888	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs562910	0.81[EUR][1000 genomes]
rs566057	1.00[ASW][hapmap]
rs665379	0.87[YRI][hapmap];0.89[AFR][1000 genomes]
rs666604	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869413	chr1:67082512-67414286	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv830093	chr1:67173594-67348264	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs502376	GADD45A	cis	lymphoblastoid	seeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67218800-67223400	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr1:67219000-67222800	Weak transcription	Pancreas	Pancrea
3	chr1:67219000-67223400	Weak transcription	Brain Substantia Nigra	brain
4	chr1:67219000-67223400	Weak transcription	Fetal Heart	heart
5	chr1:67219000-67223600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:67219000-67223800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:67219000-67224000	Weak transcription	Brain Hippocampus Middle	brain
8	chr1:67219000-67224000	Weak transcription	Right Atrium	heart
9	chr1:67219000-67227200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr1:67219800-67223200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr1:67221200-67227400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:67221400-67223800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr1:67221600-67236400	Weak transcription	Liver	Liver
14	chr1:67222000-67224600	Enhancers	Primary hematopoietic stem cells	blood
15	chr1:67222200-67223200	Enhancers	K562	blood
16	chr1:67222400-67222800	Enhancers	Left Ventricle	heart
17	chr1:67222400-67222800	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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