Variant report

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:75227405..75232101-chr15:75240880..75245269,7	K562	blood:
2	chr15:75062011..75065079-chr15:75241934..75244440,3	K562	blood:
3	chr15:75190211..75193395-chr15:75240493..75244229,3	K562	blood:
4	chr15:75133829..75136653-chr15:75240759..75243011,2	MCF-7	breast:
5	chr15:75241283..75245937-chr15:75246466..75251026,6	MCF-7	breast:
6	chr15:75227744..75230644-chr15:75241148..75245834,4	MCF-7	breast:
7	chr15:75052007..75053577-chr15:75242225..75244703,2	K562	blood:
8	chr15:75230684..75233545-chr15:75240666..75243192,3	MCF-7	breast:
9	chr15:75241707..75244594-chr15:75247283..75249882,3	MCF-7	breast:
10	chr15:75052007..75054133-chr15:75241107..75244703,3	K562	blood:
11	chr15:75240908..75244606-chr15:75245585..75249293,3	K562	blood:
12	chr15:74927420..74928132-chr15:75242263..75242985,3	K562	blood:
13	chr15:75237193..75238975-chr15:75241477..75242984,2	MCF-7	breast:
14	chr15:75196119..75200207-chr15:75241156..75244541,4	MCF-7	breast:
15	chr15:75197433..75199009-chr15:75241405..75242986,2	K562	blood:
16	chr15:75080213..75082782-chr15:75242128..75244400,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11072516	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs5025115	SCAMP2	cis	Esophagus Mucosa	GTEx
rs5025115	SCAMP5	cis	Artery Tibial	GTEx
rs5025115	PPCDC	cis	Muscle Skeletal	GTEx
rs5025115	COX5A	Cis_1M	lymphoblastoid	RTeQTL
rs5025115	SCAMP2	cis	Whole Blood	GTEx

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75231000-75243200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:75237000-75244400	Weak transcription	Placenta	Placenta
3	chr15:75242000-75242800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:75242000-75242800	Enhancers	Ovary	ovary
5	chr15:75242000-75243200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr15:75242200-75242600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr15:75242200-75243000	Enhancers	K562	blood
8	chr15:75242200-75243400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr15:75242200-75243600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr15:75242400-75242800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:75242400-75242800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:75242400-75242800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr15:75242400-75242800	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr15:75242400-75242800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr15:75242400-75242800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr15:75242400-75242800	Enhancers	Stomach Smooth Muscle	stomach
17	chr15:75242400-75243000	Enhancers	Brain Anterior Caudate	brain
18	chr15:75242400-75243200	Enhancers	H9 Cell Line	embryonic stem cell
19	chr15:75242400-75243200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:75242400-75243400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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