Variant report

Variant	rs5025589
Chromosome Location	chr3:179298482-179298483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:179290222..179293111-chr3:179297707..179299796,2	K562	blood:
2	chr3:179298154..179300784-chr3:179302135..179303888,3	K562	blood:
3	chr3:179297625..179299441-chr3:179334166..179336663,2	MCF-7	breast:
4	chr3:179290222..179293246-chr3:179296618..179299796,3	K562	blood:
5	chr3:179279829..179282586-chr3:179298283..179300975,2	K562	blood:

Variant related genes	Relation type
ENSG00000272660	Chromatin interaction
ENSG00000136518	Chromatin interaction
ENSG00000136521	Chromatin interaction

rs_ID	r²[population]
rs11539415	1.00[LWK][hapmap]
rs6785328	1.00[CEU][hapmap];1.00[MEX][hapmap]

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179281800-179315000	Weak transcription	Esophagus	oesophagus
2	chr3:179282000-179300600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:179282000-179304400	Weak transcription	Colonic Mucosa	Colon
4	chr3:179282000-179316000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:179282000-179321200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:179282000-179321800	Weak transcription	Aorta	Aorta
7	chr3:179282200-179304600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:179282400-179306200	Weak transcription	A549	lung
9	chr3:179282400-179311000	Weak transcription	Stomach Mucosa	stomach
10	chr3:179284600-179304600	Weak transcription	Pancreas	Pancrea
11	chr3:179286400-179304600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:179286400-179319800	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr3:179286600-179316200	Strong transcription	Dnd41	blood
14	chr3:179286600-179319600	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr3:179286600-179320800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:179286800-179320400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr3:179287000-179320800	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr3:179287400-179302200	Strong transcription	Duodenum Mucosa	Duodenum
19	chr3:179287400-179320000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:179287400-179320200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr3:179287400-179320200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr3:179287400-179320200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:179287400-179320200	Strong transcription	Fetal Thymus	thymus
24	chr3:179287400-179320400	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr3:179287400-179320600	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr3:179287400-179320600	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr3:179287600-179302200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:179287600-179320000	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr3:179287600-179320000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr3:179287600-179320200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr3:179287800-179320000	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr3:179287800-179320800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr3:179289600-179312400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr3:179289800-179298800	Weak transcription	Fetal Brain Male	brain
35	chr3:179289800-179304600	Weak transcription	Right Ventricle	heart
36	chr3:179289800-179305200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr3:179289800-179310600	Weak transcription	Small Intestine	intestine
38	chr3:179290800-179319200	Strong transcription	Fetal Intestine Large	intestine
39	chr3:179291600-179299600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr3:179291600-179302000	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr3:179291600-179302200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr3:179292000-179320200	Strong transcription	Primary B cells from peripheral blood	blood
43	chr3:179292000-179320800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr3:179292000-179320800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr3:179292200-179301000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
46	chr3:179292200-179302000	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr3:179292200-179302200	Strong transcription	Primary T cells from cord blood	blood
48	chr3:179292200-179308600	Strong transcription	Adipose Nuclei	Adipose
49	chr3:179292200-179309600	Strong transcription	Fetal Muscle Trunk	muscle
50	chr3:179292200-179312000	Strong transcription	H1 Cell Line	embryonic stem cell

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